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W23: DNA Methylation Analysis

February 25 @ 1:30 pm - February 27 @ 4:30 pm

This workshop will introduce the basic principles of DNA methylation and briefly describe available methods for DNA methylation assessment, focusing on bisulfite sequencing (BSseq). We will cover the principles of BSseq preprocessing, alignment and methylation calling, differential methylation analysis, annotation and visualization. Attendees will  have the opportunity to work on real DNA methylation data provided by the instructor and run the analysis on Hoffman2 and locally. Attendees need to have a basic knowledge in UNIX commands and R programming for this workshop. No previous experience with NGS or DNA methylation analysis is necessary. 

Details

Start:
February 25 @ 1:30 pm
End:
February 27 @ 4:30 pm
Event Categories:
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Event Tags:
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Website:
https://qcb.ucla.edu/collaboratory-2/workshops/w7-chip-seq-analysis-2/

Organizer

QCB Collaboratory
Phone:
310-825-2917
Email:
collaboratory@ucla.edu
Website:
https://qcb.ucla.edu/collaboratory/schedule-of-workshops/

Venue

529 Boyer Hall
611 Charles E Young Dr E,
Los Angeles, CA 90095 United States
+ Google Map
Phone:
3108252917

Details

Start:
February 25 @ 1:30 pm
End:
February 27 @ 4:30 pm
Event Categories:
,
Event Tags:
, , ,
Website:
https://qcb.ucla.edu/collaboratory-2/workshops/w7-chip-seq-analysis-2/

Organizer

QCB Collaboratory
Phone:
310-825-2917
Email:
collaboratory@ucla.edu
Website:
https://qcb.ucla.edu/collaboratory/schedule-of-workshops/

Venue

529 Boyer Hall
611 Charles E Young Dr E,
Los Angeles, CA 90095 United States
+ Google Map
Phone:
3108252917