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X-WR-CALNAME:Institute for Quantitative and Computational Biosciences
X-ORIGINAL-URL:https://qcb.ucla.edu
X-WR-CALDESC:Events for Institute for Quantitative and Computational Biosciences
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DTSTART;TZID=America/Los_Angeles:20260407T090000
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DTSTAMP:20260421T050721
CREATED:20191212T190507Z
LAST-MODIFIED:20260310T165049Z
UID:10782-1775552400-1775736000@qcb.ucla.edu
SUMMARY:W2: Using NGS Analysis Tools
DESCRIPTION:High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First\, this workshop introduces the more “universal” aspects of high-throughput sequence analysis—from experimental design to sequencing and alignment methods. Next\, this workshop covers common file formats for sequence data and limitations of sequencing technologies. \nWe will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data\, clean artifact and low-quality sequences\, and align short reads to a reference genome. At the end of this workshop\, students will better understand the logic behind how many of these steps work. \nStudents who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement\, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.
URL:https://qcb.ucla.edu/event/w2-using-ngs-analysis-tools/
LOCATION:529 Boyer Hall\, 611 Charles E Young Dr E\,\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Workshops,Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2020/02/1dNLbh0n_400x400.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
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DTSTART;TZID=America/Los_Angeles:20260407T133000
DTEND;TZID=America/Los_Angeles:20260409T163000
DTSTAMP:20260421T050721
CREATED:20191212T190540Z
LAST-MODIFIED:20260310T165127Z
UID:10789-1775568600-1775752200@qcb.ucla.edu
SUMMARY:W18: Advanced Python
DESCRIPTION:This workshop will cover some more advanced topics in python including an overview of object-oriented python (this will not be an in-depth course on object-oriented programming)\, use of the numpy and pandas libraries (python libraries for efficient handling of large numeric and heterogenous datasets\, and matplotlib for plotting results. At the end of this workshop\, students will better understand the python data structures for handling large datasets and will have some knowledge of how to manipulate these data and plot them for presentation.
URL:https://qcb.ucla.edu/event/w18-advanced-python/
LOCATION:529 Boyer Hall\, 611 Charles E Young Dr E\,\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Workshops,Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2020/02/1dNLbh0n_400x400.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
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