BEGIN:VCALENDAR
VERSION:2.0
PRODID:-//Institute for Quantitative and Computational Biosciences - ECPv6.16.4//NONSGML v1.0//EN
CALSCALE:GREGORIAN
METHOD:PUBLISH
X-WR-CALNAME:Institute for Quantitative and Computational Biosciences
X-ORIGINAL-URL:https://qcb.ucla.edu
X-WR-CALDESC:Events for Institute for Quantitative and Computational Biosciences
REFRESH-INTERVAL;VALUE=DURATION:PT1H
X-Robots-Tag:noindex
X-PUBLISHED-TTL:PT1H
BEGIN:VTIMEZONE
TZID:America/Los_Angeles
BEGIN:DAYLIGHT
TZOFFSETFROM:-0800
TZOFFSETTO:-0700
TZNAME:PDT
DTSTART:20170312T100000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:-0700
TZOFFSETTO:-0800
TZNAME:PST
DTSTART:20171105T090000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:-0800
TZOFFSETTO:-0700
TZNAME:PDT
DTSTART:20180311T100000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:-0700
TZOFFSETTO:-0800
TZNAME:PST
DTSTART:20181104T090000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:-0800
TZOFFSETTO:-0700
TZNAME:PDT
DTSTART:20190310T100000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:-0700
TZOFFSETTO:-0800
TZNAME:PST
DTSTART:20191103T090000
END:STANDARD
BEGIN:DAYLIGHT
TZOFFSETFROM:-0800
TZOFFSETTO:-0700
TZNAME:PDT
DTSTART:20200308T100000
END:DAYLIGHT
BEGIN:STANDARD
TZOFFSETFROM:-0700
TZOFFSETTO:-0800
TZNAME:PST
DTSTART:20201101T090000
END:STANDARD
END:VTIMEZONE
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190130T090000
DTEND;TZID=America/Los_Angeles:20190130T120000
DTSTAMP:20260618T105545
CREATED:20181108T195350Z
LAST-MODIFIED:20181115T002900Z
UID:8066-1548838800-1548849600@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis I - Day Two
DESCRIPTION:RNA sequencing is used to examine the continuously changing cellular transcriptome. First\, this workshop provides an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). This workshop can serve as a starting point to develop a gene expression project. To facilitate learning\, we will explore a hands-on tutorial that guides students in processing the data from raw reads through read counts. We will use a real-case study-based approach appropriate for Illumina read data.
URL:https://qcb.ucla.edu/event/rna-seq-analysis-i-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-07-RNA-seq-I.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190129T130000
DTEND;TZID=America/Los_Angeles:20190129T150000
DTSTAMP:20260618T105545
CREATED:20181108T195353Z
LAST-MODIFIED:20181115T002829Z
UID:8068-1548766800-1548774000@qcb.ucla.edu
SUMMARY:Introduction to Python - Day One
DESCRIPTION:This workshop covers the basic concepts of Python programming. The course is supplemented with many hands-on exercises with emphasis given towards computational biology use cases.
URL:https://qcb.ucla.edu/event/introduction-to-python-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-08-Intro-to-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190129T090000
DTEND;TZID=America/Los_Angeles:20190129T120000
DTSTAMP:20260618T105545
CREATED:20181108T195350Z
LAST-MODIFIED:20181115T002910Z
UID:8065-1548752400-1548763200@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis I - Day One
DESCRIPTION:RNA sequencing is used to examine the continuously changing cellular transcriptome. First\, this workshop provides an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). This workshop can serve as a starting point to develop a gene expression project. To facilitate learning\, we will explore a hands-on tutorial that guides students in processing the data from raw reads through read counts. We will use a real-case study-based approach appropriate for Illumina read data.
URL:https://qcb.ucla.edu/event/rna-seq-analysis-i-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-07-RNA-seq-I.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190125T130000
DTEND;TZID=America/Los_Angeles:20190125T130000
DTSTAMP:20260618T105545
CREATED:20190110T001323Z
LAST-MODIFIED:20190110T001323Z
UID:8458-1548421200-1548421200@qcb.ucla.edu
SUMMARY:QCB Seminar: Dr. James Ferrell\, Stanford
DESCRIPTION:Trigger Waves in Cell Signaling \nJAMES FERRELL\nProfessor\nChemical and Systems Biology/Chemistry\nStanford University \n  \nJanuary 25\, 2019 \n1:00PM to 2:00PM \nBOYER HALL 159 \n  \n \n  \n— \n  \nFRONTIERS IN QUANTITATIVE AND SYSTEMS BIOLOGY SEMINAR SERIES \n  \nJANUARY 11 – MARCH 15\, 2019 \n  \nSeminars are held Fridays 1-2pm in Boyer Hall. \nAll seminars are free and open to the public. \n  \nA speaker series sponsored by the Department of Biomathematics and the Institute for Quantitative and Computational Biosciences (QCBio).
URL:https://qcb.ucla.edu/event/qcb-seminar-dr-james-ferrell-stanford/
LOCATION:Boyer Hall 159
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2019/01/2019-01-25-JAMES-FERRELL.png
ORGANIZER;CN="Lana Martin":MAILTO:lana.martin@lifesci.ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190124T130000
DTEND;TZID=America/Los_Angeles:20190124T153000
DTSTAMP:20260618T105545
CREATED:20181108T195349Z
LAST-MODIFIED:20181115T002935Z
UID:8064-1548334800-1548343800@qcb.ucla.edu
SUMMARY:Introduction to Modern Statistics - Day Three
DESCRIPTION:Workshop attendees will walk away knowing when and how to run modern versions of traditional statistical analysis. First\, this workshop introduces tests and underlying bioinformatical lessons about resampling which are useful to most scientific disciplines. This workshop makes no assumptions about familiarity with traditional statistics; we will simply go through relatable experimental examples and ask how to test various hypotheses\, introducing the relevant methods along the way. Next\, this workshop covers how to best deal with common questions in experimental analysis: What tests can be applied to small sample sizes? When can one assume linearity in the data? What to do with non-Gaussian data / residuals? How does one best detect and justify removing outliers? Which estimators are appropriate with highly non-continuous samples?
URL:https://qcb.ucla.edu/event/introduction-to-modern-statistics-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-06-Modern-Stats.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190124T090000
DTEND;TZID=America/Los_Angeles:20190124T120000
DTSTAMP:20260618T105545
CREATED:20181108T195346Z
LAST-MODIFIED:20181115T003012Z
UID:8061-1548320400-1548331200@qcb.ucla.edu
SUMMARY:Introduction to R - Day Three
DESCRIPTION:R (www.r-project.org) is a free software environment for statistical computing and graphics. First\, this workshop introduces basic concepts\, syntax\, and usage in R programming\, statistical analysis\, and visualization techniques. We will conduct hands-on tutorials throughout the session\, giving attendees a chance to see R in action. This workshop is geared toward those with little or no prior experience with R. Next\, this workshop covers an introduction to Bioconductor (www.bioconductor.org)\, which provides tools for the analysis of high throughput genomic data. If you are interested in any particular R/Bioconductor topic\, please contact the instructor in advance; effort will be made to cover topics of general interest.
URL:https://qcb.ucla.edu/event/introduction-to-r-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-05-Intro-to-R.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190123T130000
DTEND;TZID=America/Los_Angeles:20190123T153000
DTSTAMP:20260618T105545
CREATED:20181108T195348Z
LAST-MODIFIED:20181115T002944Z
UID:8063-1548248400-1548257400@qcb.ucla.edu
SUMMARY:Introduction to Modern Statistics - Day Two
DESCRIPTION:Workshop attendees will walk away knowing when and how to run modern versions of traditional statistical analysis. First\, this workshop introduces tests and underlying bioinformatical lessons about resampling which are useful to most scientific disciplines. This workshop makes no assumptions about familiarity with traditional statistics; we will simply go through relatable experimental examples and ask how to test various hypotheses\, introducing the relevant methods along the way. Next\, this workshop covers how to best deal with common questions in experimental analysis: What tests can be applied to small sample sizes? When can one assume linearity in the data? What to do with non-Gaussian data / residuals? How does one best detect and justify removing outliers? Which estimators are appropriate with highly non-continuous samples?
URL:https://qcb.ucla.edu/event/introduction-to-modern-statistics-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-06-Modern-Stats.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190123T090000
DTEND;TZID=America/Los_Angeles:20190123T120000
DTSTAMP:20260618T105545
CREATED:20181108T195345Z
LAST-MODIFIED:20181115T003018Z
UID:8060-1548234000-1548244800@qcb.ucla.edu
SUMMARY:Introduction to R - Day Two
DESCRIPTION:R (www.r-project.org) is a free software environment for statistical computing and graphics. First\, this workshop introduces basic concepts\, syntax\, and usage in R programming\, statistical analysis\, and visualization techniques. We will conduct hands-on tutorials throughout the session\, giving attendees a chance to see R in action. This workshop is geared toward those with little or no prior experience with R. Next\, this workshop covers an introduction to Bioconductor (www.bioconductor.org)\, which provides tools for the analysis of high throughput genomic data. If you are interested in any particular R/Bioconductor topic\, please contact the instructor in advance; effort will be made to cover topics of general interest.
URL:https://qcb.ucla.edu/event/introduction-to-r-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-05-Intro-to-R.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190122T130000
DTEND;TZID=America/Los_Angeles:20190122T153000
DTSTAMP:20260618T105545
CREATED:20181108T195347Z
LAST-MODIFIED:20181115T002952Z
UID:8062-1548162000-1548171000@qcb.ucla.edu
SUMMARY:Introduction to Modern Statistics - Day One
DESCRIPTION:Workshop attendees will walk away knowing when and how to run modern versions of traditional statistical analysis. First\, this workshop introduces tests and underlying bioinformatical lessons about resampling which are useful to most scientific disciplines. This workshop makes no assumptions about familiarity with traditional statistics; we will simply go through relatable experimental examples and ask how to test various hypotheses\, introducing the relevant methods along the way. Next\, this workshop covers how to best deal with common questions in experimental analysis: What tests can be applied to small sample sizes? When can one assume linearity in the data? What to do with non-Gaussian data / residuals? How does one best detect and justify removing outliers? Which estimators are appropriate with highly non-continuous samples?
URL:https://qcb.ucla.edu/event/introduction-to-modern-statistics-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-06-Modern-Stats.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190122T090000
DTEND;TZID=America/Los_Angeles:20190122T120000
DTSTAMP:20260618T105545
CREATED:20181108T195344Z
LAST-MODIFIED:20181115T003023Z
UID:8059-1548147600-1548158400@qcb.ucla.edu
SUMMARY:Introduction to R - Day One
DESCRIPTION:R (www.r-project.org) is a free software environment for statistical computing and graphics. First\, this workshop introduces basic concepts\, syntax\, and usage in R programming\, statistical analysis\, and visualization techniques. We will conduct hands-on tutorials throughout the session\, giving attendees a chance to see R in action. This workshop is geared toward those with little or no prior experience with R. Next\, this workshop covers an introduction to Bioconductor (www.bioconductor.org)\, which provides tools for the analysis of high throughput genomic data. If you are interested in any particular R/Bioconductor topic\, please contact the instructor in advance; effort will be made to cover topics of general interest.
URL:https://qcb.ucla.edu/event/introduction-to-r-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-05-Intro-to-R.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190118T130000
DTEND;TZID=America/Los_Angeles:20190118T140000
DTSTAMP:20260618T105545
CREATED:20190110T001011Z
LAST-MODIFIED:20190110T004920Z
UID:8448-1547816400-1547820000@qcb.ucla.edu
SUMMARY:QCBio Seminar: Dr. Alex Mogilner\, NYU
DESCRIPTION:In Vitro and in Silico Reconstruction of Actin Dynamics \nALEX MOGILNER\nProfessor of Mathematics and Biology – Courant Institute\nNew York University \nJanuary 18\, 2019\n1:00PM to 2:00PM\nBOYER HALL\, ROOM 130 \n \n— \n  \nFRONTIERS IN QUANTITATIVE AND SYSTEMS BIOLOGY SEMINAR SERIES \n  \nJANUARY 11 – MARCH 15\, 2019 \n  \nSeminars are held Fridays 1-2pm in Boyer Hall. \nAll seminars are free and open to the public. \n  \nA speaker series sponsored by the Department of Biomathematics and the Institute for Quantitative and Computational Biosciences (QCBio).
URL:https://qcb.ucla.edu/event/qcbio-seminar-dr-alex-mogilner-nyu/
LOCATION:Boyer Hall 159
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2019/01/2019-01-18-ALEX-MOGILNER.png
ORGANIZER;CN="Lana Martin":MAILTO:lana.martin@lifesci.ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190117T140000
DTEND;TZID=America/Los_Angeles:20190117T170000
DTSTAMP:20260618T105545
CREATED:20181108T195343Z
LAST-MODIFIED:20181115T003048Z
UID:8058-1547733600-1547744400@qcb.ucla.edu
SUMMARY:Introduction to Unix - Day Three
DESCRIPTION:Unix is a command-line-based platform that is a highly powerful and flexible tool for data management and analysis. First\, this workshop introduces the basic concepts of UNIX operating system and shell scripting. We will explore essential hands-on skills to confidently use the command line interface on either a local (laptop) or a remote (hoffman2 cluster) computer running the Unix system. Next\, this workshop covers how to navigate around the Unix file system from the command line and use a number of basic\, common Unix commands. The course is supplemented with many hands-on examples. No prior knowledge of Unix or programming is required.
URL:https://qcb.ucla.edu/event/introduction-to-unix-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-04-Intro-to-Unix.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190117T090000
DTEND;TZID=America/Los_Angeles:20190117T120000
DTSTAMP:20260618T105545
CREATED:20181108T195340Z
LAST-MODIFIED:20181115T003123Z
UID:8055-1547715600-1547726400@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day Three
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-03-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190116T140000
DTEND;TZID=America/Los_Angeles:20190116T170000
DTSTAMP:20260618T105545
CREATED:20181108T195342Z
LAST-MODIFIED:20181115T003054Z
UID:8057-1547647200-1547658000@qcb.ucla.edu
SUMMARY:Introduction to Unix - Day Two
DESCRIPTION:Unix is a command-line-based platform that is a highly powerful and flexible tool for data management and analysis. First\, this workshop introduces the basic concepts of UNIX operating system and shell scripting. We will explore essential hands-on skills to confidently use the command line interface on either a local (laptop) or a remote (hoffman2 cluster) computer running the Unix system. Next\, this workshop covers how to navigate around the Unix file system from the command line and use a number of basic\, common Unix commands. The course is supplemented with many hands-on examples. No prior knowledge of Unix or programming is required.
URL:https://qcb.ucla.edu/event/introduction-to-unix-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-04-Intro-to-Unix.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190116T090000
DTEND;TZID=America/Los_Angeles:20190116T120000
DTSTAMP:20260618T105545
CREATED:20181108T195339Z
LAST-MODIFIED:20181115T003130Z
UID:8054-1547629200-1547640000@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day Two
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-03-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190115T140000
DTEND;TZID=America/Los_Angeles:20190115T170000
DTSTAMP:20260618T105545
CREATED:20181108T195341Z
LAST-MODIFIED:20181115T003058Z
UID:8056-1547560800-1547571600@qcb.ucla.edu
SUMMARY:Introduction to Unix - Day One
DESCRIPTION:Unix is a command-line-based platform that is a highly powerful and flexible tool for data management and analysis. First\, this workshop introduces the basic concepts of UNIX operating system and shell scripting. We will explore essential hands-on skills to confidently use the command line interface on either a local (laptop) or a remote (hoffman2 cluster) computer running the Unix system. Next\, this workshop covers how to navigate around the Unix file system from the command line and use a number of basic\, common Unix commands. The course is supplemented with many hands-on examples. No prior knowledge of Unix or programming is required.
URL:https://qcb.ucla.edu/event/introduction-to-unix-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-04-Intro-to-Unix.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190115T090000
DTEND;TZID=America/Los_Angeles:20190115T120000
DTSTAMP:20260618T105545
CREATED:20181108T195339Z
LAST-MODIFIED:20181115T003134Z
UID:8053-1547542800-1547553600@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day One
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-03-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190111T130000
DTEND;TZID=America/Los_Angeles:20190111T140000
DTSTAMP:20260618T105545
CREATED:20190109T001041Z
LAST-MODIFIED:20190109T001041Z
UID:8443-1547211600-1547215200@qcb.ucla.edu
SUMMARY:QCB Seminar: Dr. Wenying Shou\, Fred Hutch Cancer Res Ctr
DESCRIPTION:Uncovering and resolving Challenges of Quantitative Modeling in a Simplified Microbial Community \nWENYING SHOU \nAffiliate Associate Professor \nFred Hutch Cancer Research Center – Seattle\, WA \nJanuary 11\, 2019 \n1:00PM to 2:00PM \nBOYER HALL 159 \n  \n \n  \n— \n  \nFRONTIERS IN QUANTITATIVE AND SYSTEMS BIOLOGY SEMINAR SERIES \n  \nJANUARY 11 – MARCH 15\, 2019 \n  \nSeminars are held Fridays 1-2pm in Boyer Hall. \nAll seminars are free and open to the public. \n  \nA speaker series sponsored by the Department of Biomathematics and the Institute for Quantitative and Computational Biosciences (QCBio).
URL:https://qcb.ucla.edu/event/qcb-seminar-dr-wenying-shou-fred-hutch-cancer-res-ctr/
LOCATION:Boyer Hall 159
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2019/01/2019-01-11-WENYING-SHOU.png
ORGANIZER;CN="Lana Martin":MAILTO:lana.martin@lifesci.ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190110T133000
DTEND;TZID=America/Los_Angeles:20190110T163000
DTSTAMP:20260618T105545
CREATED:20181108T195337Z
LAST-MODIFIED:20181115T003204Z
UID:8052-1547127000-1547137800@qcb.ucla.edu
SUMMARY:Advanced Python - Day Three
DESCRIPTION:Python can be used to handle large datasets\, and is useful in manipulating data and plotting data trends for visual presentation. First\, this workshop introduces several more advanced topics in Python\, such as a brief overview of object-oriented Python\, use of the numpy and pandas libraries (Python libraries for efficient handling of large numeric and heterogenous datasets)\, and matplotlib for plotting results. At the end of this workshop\, students will better understand the python data structures for handling large datasets and will have some knowledge of how to manipulate these data and plot them for presentation.
URL:https://qcb.ucla.edu/event/advanced-python-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-02-Advanced-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190110T090000
DTEND;TZID=America/Los_Angeles:20190110T120000
DTSTAMP:20260618T105545
CREATED:20181108T195332Z
LAST-MODIFIED:20181115T003240Z
UID:8049-1547110800-1547121600@qcb.ucla.edu
SUMMARY:Using NGS Analysis Tools - Day Three
DESCRIPTION:High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First\, this workshop introduces the more ÒuniversalÓ aspects of high-throughput sequence analysisÑfrom experimental design to sequencing and alignment methods. Next\, this workshop covers common file formats for sequence data and limitations of sequencing technologies. We will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data\, clean artifact and low-quality sequences\, and align short reads to a reference genome. At the end of this workshop\, students will better understand the logic behind how many of these steps work. Students who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement\, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.
URL:https://qcb.ucla.edu/event/using-ngs-analysis-tools-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-01-Using-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190109T133000
DTEND;TZID=America/Los_Angeles:20190109T163000
DTSTAMP:20260618T105545
CREATED:20181108T195334Z
LAST-MODIFIED:20181115T003208Z
UID:8051-1547040600-1547051400@qcb.ucla.edu
SUMMARY:Advanced Python - Day Two
DESCRIPTION:Python can be used to handle large datasets\, and is useful in manipulating data and plotting data trends for visual presentation. First\, this workshop introduces several more advanced topics in Python\, such as a brief overview of object-oriented Python\, use of the numpy and pandas libraries (Python libraries for efficient handling of large numeric and heterogenous datasets)\, and matplotlib for plotting results. At the end of this workshop\, students will better understand the python data structures for handling large datasets and will have some knowledge of how to manipulate these data and plot them for presentation.
URL:https://qcb.ucla.edu/event/advanced-python-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-02-Advanced-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190109T090000
DTEND;TZID=America/Los_Angeles:20190109T120000
DTSTAMP:20260618T105545
CREATED:20181108T195331Z
LAST-MODIFIED:20181115T003245Z
UID:8048-1547024400-1547035200@qcb.ucla.edu
SUMMARY:Using NGS Analysis Tools - Day Two
DESCRIPTION:High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First\, this workshop introduces the more ÒuniversalÓ aspects of high-throughput sequence analysisÑfrom experimental design to sequencing and alignment methods. Next\, this workshop covers common file formats for sequence data and limitations of sequencing technologies. We will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data\, clean artifact and low-quality sequences\, and align short reads to a reference genome. At the end of this workshop\, students will better understand the logic behind how many of these steps work. Students who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement\, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.
URL:https://qcb.ucla.edu/event/using-ngs-analysis-tools-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-01-Using-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190108T133000
DTEND;TZID=America/Los_Angeles:20190108T163000
DTSTAMP:20260618T105545
CREATED:20181108T195333Z
LAST-MODIFIED:20181115T003213Z
UID:8050-1546954200-1546965000@qcb.ucla.edu
SUMMARY:Advanced Python - Day One
DESCRIPTION:Python can be used to handle large datasets\, and is useful in manipulating data and plotting data trends for visual presentation. First\, this workshop introduces several more advanced topics in Python\, such as a brief overview of object-oriented Python\, use of the numpy and pandas libraries (Python libraries for efficient handling of large numeric and heterogenous datasets)\, and matplotlib for plotting results. At the end of this workshop\, students will better understand the python data structures for handling large datasets and will have some knowledge of how to manipulate these data and plot them for presentation.
URL:https://qcb.ucla.edu/event/advanced-python-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-02-Advanced-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190108T090000
DTEND;TZID=America/Los_Angeles:20190108T120000
DTSTAMP:20260618T105545
CREATED:20181108T195330Z
LAST-MODIFIED:20181115T003249Z
UID:8047-1546938000-1546948800@qcb.ucla.edu
SUMMARY:Using NGS Analysis Tools - Day One
DESCRIPTION:High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First\, this workshop introduces the more ÒuniversalÓ aspects of high-throughput sequence analysisÑfrom experimental design to sequencing and alignment methods. Next\, this workshop covers common file formats for sequence data and limitations of sequencing technologies. We will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data\, clean artifact and low-quality sequences\, and align short reads to a reference genome. At the end of this workshop\, students will better understand the logic behind how many of these steps work. Students who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement\, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.
URL:https://qcb.ucla.edu/event/using-ngs-analysis-tools-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-01-Using-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181217T110000
DTEND;TZID=America/Los_Angeles:20181217T120000
DTSTAMP:20260618T105545
CREATED:20181031T190754Z
LAST-MODIFIED:20181031T190759Z
UID:7990-1545044400-1545048000@qcb.ucla.edu
SUMMARY:Dan Benjamin\, Title TBA   Human Genetics Seminar Series
DESCRIPTION:
URL:https://qcb.ucla.edu/event/dan-benjamin-title-tba-human-genetics-seminar-series/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181206T120000
DTEND;TZID=America/Los_Angeles:20181206T130000
DTSTAMP:20260618T105545
CREATED:20181031T194836Z
LAST-MODIFIED:20181031T194836Z
UID:8005-1544097600-1544101200@qcb.ucla.edu
SUMMARY:Kun Zhang\, PH.D. "Construction of 3D single-cell maps of human organs"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/kun-zhang-ph-d-construction-of-3d-single-cell-maps-of-human-organs/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181129T120000
DTEND;TZID=America/Los_Angeles:20181129T130000
DTSTAMP:20260618T105545
CREATED:20181031T191521Z
LAST-MODIFIED:20181031T194635Z
UID:8002-1543492800-1543496400@qcb.ucla.edu
SUMMARY:X. Edward Guo\, Ph.D.\, "Bioengineering: Microstructure\, Mechanics\, Mechanobiology\, and Beyond"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/x-edward-guo-ph-d-bioengineering-microstructure-mechanics-mechanobiology-and-beyond/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181126T160000
DTEND;TZID=America/Los_Angeles:20181126T170000
DTSTAMP:20260618T105545
CREATED:20181031T190204Z
LAST-MODIFIED:20181031T190303Z
UID:7984-1543248000-1543251600@qcb.ucla.edu
SUMMARY:Paul Boutros\, Title TBA\, Bioinformatics Seminar Series
DESCRIPTION:
URL:https://qcb.ucla.edu/event/paul-boutros-title-tba-bioinformatics-seminar-series/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181119T160000
DTEND;TZID=America/Los_Angeles:20181119T170000
DTSTAMP:20260618T105545
CREATED:20181031T185814Z
LAST-MODIFIED:20181031T185906Z
UID:7981-1542643200-1542646800@qcb.ucla.edu
SUMMARY:Ferhat Ay\, "Characterizing Distal Enhancer Landscapes of Human Immune Cells with (Fit)HiChIp"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/ferhat-ay-characterizing-distal-enhancer-landscapes-of-human-immune-cells-with-fithichip/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181119T110000
DTEND;TZID=America/Los_Angeles:20181119T120000
DTSTAMP:20260618T105545
CREATED:20181031T190528Z
LAST-MODIFIED:20181031T190528Z
UID:7987-1542625200-1542628800@qcb.ucla.edu
SUMMARY:Luis Quintana-Murci\, "Human (epi)genetic adaption to pathogens and infectious diseases"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/luis-quintana-murci-human-epigenetic-adaption-to-pathogens-and-infectious-diseases/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
END:VCALENDAR