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X-WR-CALDESC:Events for Institute for Quantitative and Computational Biosciences
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DTSTART;TZID=America/Los_Angeles:20190109T133000
DTEND;TZID=America/Los_Angeles:20190109T163000
DTSTAMP:20260618T132321
CREATED:20181108T195334Z
LAST-MODIFIED:20181115T003208Z
UID:8051-1547040600-1547051400@qcb.ucla.edu
SUMMARY:Advanced Python - Day Two
DESCRIPTION:Python can be used to handle large datasets\, and is useful in manipulating data and plotting data trends for visual presentation. First\, this workshop introduces several more advanced topics in Python\, such as a brief overview of object-oriented Python\, use of the numpy and pandas libraries (Python libraries for efficient handling of large numeric and heterogenous datasets)\, and matplotlib for plotting results. At the end of this workshop\, students will better understand the python data structures for handling large datasets and will have some knowledge of how to manipulate these data and plot them for presentation.
URL:https://qcb.ucla.edu/event/advanced-python-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-02-Advanced-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190109T090000
DTEND;TZID=America/Los_Angeles:20190109T120000
DTSTAMP:20260618T132321
CREATED:20181108T195331Z
LAST-MODIFIED:20181115T003245Z
UID:8048-1547024400-1547035200@qcb.ucla.edu
SUMMARY:Using NGS Analysis Tools - Day Two
DESCRIPTION:High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First\, this workshop introduces the more ÒuniversalÓ aspects of high-throughput sequence analysisÑfrom experimental design to sequencing and alignment methods. Next\, this workshop covers common file formats for sequence data and limitations of sequencing technologies. We will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data\, clean artifact and low-quality sequences\, and align short reads to a reference genome. At the end of this workshop\, students will better understand the logic behind how many of these steps work. Students who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement\, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.
URL:https://qcb.ucla.edu/event/using-ngs-analysis-tools-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-01-Using-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190108T133000
DTEND;TZID=America/Los_Angeles:20190108T163000
DTSTAMP:20260618T132321
CREATED:20181108T195333Z
LAST-MODIFIED:20181115T003213Z
UID:8050-1546954200-1546965000@qcb.ucla.edu
SUMMARY:Advanced Python - Day One
DESCRIPTION:Python can be used to handle large datasets\, and is useful in manipulating data and plotting data trends for visual presentation. First\, this workshop introduces several more advanced topics in Python\, such as a brief overview of object-oriented Python\, use of the numpy and pandas libraries (Python libraries for efficient handling of large numeric and heterogenous datasets)\, and matplotlib for plotting results. At the end of this workshop\, students will better understand the python data structures for handling large datasets and will have some knowledge of how to manipulate these data and plot them for presentation.
URL:https://qcb.ucla.edu/event/advanced-python-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-02-Advanced-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190108T090000
DTEND;TZID=America/Los_Angeles:20190108T120000
DTSTAMP:20260618T132321
CREATED:20181108T195330Z
LAST-MODIFIED:20181115T003249Z
UID:8047-1546938000-1546948800@qcb.ucla.edu
SUMMARY:Using NGS Analysis Tools - Day One
DESCRIPTION:High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First\, this workshop introduces the more ÒuniversalÓ aspects of high-throughput sequence analysisÑfrom experimental design to sequencing and alignment methods. Next\, this workshop covers common file formats for sequence data and limitations of sequencing technologies. We will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data\, clean artifact and low-quality sequences\, and align short reads to a reference genome. At the end of this workshop\, students will better understand the logic behind how many of these steps work. Students who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement\, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.
URL:https://qcb.ucla.edu/event/using-ngs-analysis-tools-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/11/W19-01-Using-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181217T110000
DTEND;TZID=America/Los_Angeles:20181217T120000
DTSTAMP:20260618T132321
CREATED:20181031T190754Z
LAST-MODIFIED:20181031T190759Z
UID:7990-1545044400-1545048000@qcb.ucla.edu
SUMMARY:Dan Benjamin\, Title TBA   Human Genetics Seminar Series
DESCRIPTION:
URL:https://qcb.ucla.edu/event/dan-benjamin-title-tba-human-genetics-seminar-series/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181206T120000
DTEND;TZID=America/Los_Angeles:20181206T130000
DTSTAMP:20260618T132321
CREATED:20181031T194836Z
LAST-MODIFIED:20181031T194836Z
UID:8005-1544097600-1544101200@qcb.ucla.edu
SUMMARY:Kun Zhang\, PH.D. "Construction of 3D single-cell maps of human organs"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/kun-zhang-ph-d-construction-of-3d-single-cell-maps-of-human-organs/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181129T120000
DTEND;TZID=America/Los_Angeles:20181129T130000
DTSTAMP:20260618T132321
CREATED:20181031T191521Z
LAST-MODIFIED:20181031T194635Z
UID:8002-1543492800-1543496400@qcb.ucla.edu
SUMMARY:X. Edward Guo\, Ph.D.\, "Bioengineering: Microstructure\, Mechanics\, Mechanobiology\, and Beyond"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/x-edward-guo-ph-d-bioengineering-microstructure-mechanics-mechanobiology-and-beyond/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181126T160000
DTEND;TZID=America/Los_Angeles:20181126T170000
DTSTAMP:20260618T132321
CREATED:20181031T190204Z
LAST-MODIFIED:20181031T190303Z
UID:7984-1543248000-1543251600@qcb.ucla.edu
SUMMARY:Paul Boutros\, Title TBA\, Bioinformatics Seminar Series
DESCRIPTION:
URL:https://qcb.ucla.edu/event/paul-boutros-title-tba-bioinformatics-seminar-series/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181119T160000
DTEND;TZID=America/Los_Angeles:20181119T170000
DTSTAMP:20260618T132321
CREATED:20181031T185814Z
LAST-MODIFIED:20181031T185906Z
UID:7981-1542643200-1542646800@qcb.ucla.edu
SUMMARY:Ferhat Ay\, "Characterizing Distal Enhancer Landscapes of Human Immune Cells with (Fit)HiChIp"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/ferhat-ay-characterizing-distal-enhancer-landscapes-of-human-immune-cells-with-fithichip/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181119T110000
DTEND;TZID=America/Los_Angeles:20181119T120000
DTSTAMP:20260618T132321
CREATED:20181031T190528Z
LAST-MODIFIED:20181031T190528Z
UID:7987-1542625200-1542628800@qcb.ucla.edu
SUMMARY:Luis Quintana-Murci\, "Human (epi)genetic adaption to pathogens and infectious diseases"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/luis-quintana-murci-human-epigenetic-adaption-to-pathogens-and-infectious-diseases/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181116T130000
DTEND;TZID=America/Los_Angeles:20181116T150000
DTSTAMP:20260618T132321
CREATED:20180823T210804Z
LAST-MODIFIED:20180921T174911Z
UID:7323-1542373200-1542380400@qcb.ucla.edu
SUMMARY:Galaxy for NGS Data Analysis - Day Two
DESCRIPTION:Galaxy is a web-based infrastructure for bioinformatics application. First\, this workshop introduces participants to using Galaxy for analysis of Next-Generation Sequencing data. Next\, this workshop covers the structure of Galaxy\, data format and manipulation\, obtaining and sharing data\, and building and sharing workflows. We will use the tools installed on the UCLA galaxy to perform a few types of NGS analysis.
URL:https://qcb.ucla.edu/event/galaxy-for-ngs-data-analysis-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_13-Analyze-NGS-Data-with-Galaxy.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181116T093000
DTEND;TZID=America/Los_Angeles:20181116T123000
DTSTAMP:20260618T132321
CREATED:20180823T210806Z
LAST-MODIFIED:20180910T174909Z
UID:7325-1542360600-1542371400@qcb.ucla.edu
SUMMARY:Making GATK Work for You - Day Two
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/making-gatk-work-for-you-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_15-Making-GATK-Work-for-You.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181115T130000
DTEND;TZID=America/Los_Angeles:20181115T150000
DTSTAMP:20260618T132321
CREATED:20180823T210803Z
LAST-MODIFIED:20180921T174901Z
UID:7322-1542286800-1542294000@qcb.ucla.edu
SUMMARY:Galaxy for NGS Data Analysis - Day One
DESCRIPTION:Galaxy is a web-based infrastructure for bioinformatics application. First\, this workshop introduces participants to using Galaxy for analysis of Next-Generation Sequencing data. Next\, this workshop covers the structure of Galaxy\, data format and manipulation\, obtaining and sharing data\, and building and sharing workflows. We will use the tools installed on the UCLA galaxy to perform a few types of NGS analysis.
URL:https://qcb.ucla.edu/event/galaxy-for-ngs-data-analysis-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_13-Analyze-NGS-Data-with-Galaxy.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181115T120000
DTEND;TZID=America/Los_Angeles:20181115T130000
DTSTAMP:20260618T132321
CREATED:20181031T191326Z
LAST-MODIFIED:20181031T191326Z
UID:7999-1542283200-1542286800@qcb.ucla.edu
SUMMARY:Bin He\, Ph.D. \, "Dynamic Mapping & Interfacing with the Brain"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/bin-he-ph-d-dynamic-mapping-interfacing-with-the-brain/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181115T093000
DTEND;TZID=America/Los_Angeles:20181115T123000
DTSTAMP:20260618T132321
CREATED:20180823T210805Z
LAST-MODIFIED:20180910T174909Z
UID:7324-1542274200-1542285000@qcb.ucla.edu
SUMMARY:Making GATK Work for You - Day One
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/making-gatk-work-for-you-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_15-Making-GATK-Work-for-You.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181114T090000
DTEND;TZID=America/Los_Angeles:20181114T160000
DTSTAMP:20260618T132321
CREATED:20180823T210802Z
LAST-MODIFIED:20180910T174909Z
UID:7321-1542186000-1542211200@qcb.ucla.edu
SUMMARY:UCSC Genome Browser Workshop - Day Two
DESCRIPTION:Established in 2000\, the UCSC Genome Browser is great tool for visualizing your data alongside a ton of data from all over the place. The Genome Browser now features a broad collection of vertebrate and model organism assemblies and annotations\, along with a large suite of tools for viewing\, analyzing and downloading data. QCB Collaboratory hosts a workshop\, conducted by Dr. Robert Kuhn\, that is tailored to the specific needs and skill levels of our audience
URL:https://qcb.ucla.edu/event/ucsc-genome-browser-workshop-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_13-UCSC-Genome-Browser.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181113T090000
DTEND;TZID=America/Los_Angeles:20181113T160000
DTSTAMP:20260618T132321
CREATED:20180823T210801Z
LAST-MODIFIED:20180910T174910Z
UID:7320-1542099600-1542124800@qcb.ucla.edu
SUMMARY:UCSC Genome Browser Workshop - Day One
DESCRIPTION:Established in 2000\, the UCSC Genome Browser is great tool for visualizing your data alongside a ton of data from all over the place. The Genome Browser now features a broad collection of vertebrate and model organism assemblies and annotations\, along with a large suite of tools for viewing\, analyzing and downloading data. QCB Collaboratory hosts a workshop\, conducted by Dr. Robert Kuhn\, that is tailored to the specific needs and skill levels of our audience
URL:https://qcb.ucla.edu/event/ucsc-genome-browser-workshop-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_13-UCSC-Genome-Browser.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181108T130000
DTEND;TZID=America/Los_Angeles:20181108T150000
DTSTAMP:20260618T132321
CREATED:20180823T210801Z
LAST-MODIFIED:20180910T175013Z
UID:7319-1541682000-1541689200@qcb.ucla.edu
SUMMARY:MATLAB - Day Three
DESCRIPTION:MATLAB is a powerful\, high-level programing language for numerical computation\, visualization\, and application development. First\, this workshop introduces the MATLAB environment. Next\, this workshop covers working with arrays and matrices\, loops and conditional statements\, writing your own functions\, working with files\, and visualizing your data. We will use MATLAB to solve differential equations and conduct basic computational systems modeling. This workshop is suitable for those with or without coding experience in other languages. No computational knowledge is assumed and no prerequisite workshops are required; however\, the Unix workshop (workshop 1) may be a useful foundation.
URL:https://qcb.ucla.edu/event/matlab-day-three/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_06-MATLAB.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181108T120000
DTEND;TZID=America/Los_Angeles:20181108T130000
DTSTAMP:20260618T132321
CREATED:20181031T191127Z
LAST-MODIFIED:20181031T191158Z
UID:7996-1541678400-1541682000@qcb.ucla.edu
SUMMARY:Weihong Tan\, Ph.D.\, "The foundation of molecular medicine: A chemical biology approach "
DESCRIPTION:
URL:https://qcb.ucla.edu/event/weihong-tan-ph-d-the-foundation-of-molecular-medicine-a-chemical-biology-approach/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181108T093000
DTEND;TZID=America/Los_Angeles:20181108T123000
DTSTAMP:20260618T132321
CREATED:20180823T210758Z
LAST-MODIFIED:20180910T175013Z
UID:7316-1541669400-1541680200@qcb.ucla.edu
SUMMARY:Digital Imaging Processing in Python - Day Three
DESCRIPTION:Imaging datasets are becoming easier to acquire yet more difficult to analyze. First\, this workshop introduces computational tools available for manipulating images and extracting quantitative information. Next\, this workshop covers image conversion and handling in Python\, different methods for normalizing\, aligning and segmenting images\, and applying these techniques to a full image processing pipeline. We will focus on cellular imaging; however\, much of the techniques are broadly applicable to other data types.
URL:https://qcb.ucla.edu/event/digital-imaging-processing-in-python-day-three/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_06-Digital-Imaging-Processing-in-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181107T130000
DTEND;TZID=America/Los_Angeles:20181107T150000
DTSTAMP:20260618T132321
CREATED:20180823T210800Z
LAST-MODIFIED:20180910T175014Z
UID:7318-1541595600-1541602800@qcb.ucla.edu
SUMMARY:MATLAB - Day Two
DESCRIPTION:MATLAB is a powerful\, high-level programing language for numerical computation\, visualization\, and application development. First\, this workshop introduces the MATLAB environment. Next\, this workshop covers working with arrays and matrices\, loops and conditional statements\, writing your own functions\, working with files\, and visualizing your data. We will use MATLAB to solve differential equations and conduct basic computational systems modeling. This workshop is suitable for those with or without coding experience in other languages. No computational knowledge is assumed and no prerequisite workshops are required; however\, the Unix workshop (workshop 1) may be a useful foundation.
URL:https://qcb.ucla.edu/event/matlab-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_06-MATLAB.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181107T093000
DTEND;TZID=America/Los_Angeles:20181107T123000
DTSTAMP:20260618T132321
CREATED:20180823T210757Z
LAST-MODIFIED:20180910T175014Z
UID:7315-1541583000-1541593800@qcb.ucla.edu
SUMMARY:Digital Imaging Processing in Python - Day Two
DESCRIPTION:Imaging datasets are becoming easier to acquire yet more difficult to analyze. First\, this workshop introduces computational tools available for manipulating images and extracting quantitative information. Next\, this workshop covers image conversion and handling in Python\, different methods for normalizing\, aligning and segmenting images\, and applying these techniques to a full image processing pipeline. We will focus on cellular imaging; however\, much of the techniques are broadly applicable to other data types.
URL:https://qcb.ucla.edu/event/digital-imaging-processing-in-python-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_06-Digital-Imaging-Processing-in-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181106T130000
DTEND;TZID=America/Los_Angeles:20181106T150000
DTSTAMP:20260618T132321
CREATED:20180823T210759Z
LAST-MODIFIED:20180910T175014Z
UID:7317-1541509200-1541516400@qcb.ucla.edu
SUMMARY:MATLAB - Day One
DESCRIPTION:MATLAB is a powerful\, high-level programing language for numerical computation\, visualization\, and application development. First\, this workshop introduces the MATLAB environment. Next\, this workshop covers working with arrays and matrices\, loops and conditional statements\, writing your own functions\, working with files\, and visualizing your data. We will use MATLAB to solve differential equations and conduct basic computational systems modeling. This workshop is suitable for those with or without coding experience in other languages. No computational knowledge is assumed and no prerequisite workshops are required; however\, the Unix workshop (workshop 1) may be a useful foundation.
URL:https://qcb.ucla.edu/event/matlab-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_06-MATLAB.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181106T093000
DTEND;TZID=America/Los_Angeles:20181106T123000
DTSTAMP:20260618T132321
CREATED:20180823T210756Z
LAST-MODIFIED:20180910T175014Z
UID:7314-1541496600-1541507400@qcb.ucla.edu
SUMMARY:Digital Imaging Processing in Python - Day One
DESCRIPTION:Imaging datasets are becoming easier to acquire yet more difficult to analyze. First\, this workshop introduces computational tools available for manipulating images and extracting quantitative information. Next\, this workshop covers image conversion and handling in Python\, different methods for normalizing\, aligning and segmenting images\, and applying these techniques to a full image processing pipeline. We will focus on cellular imaging; however\, much of the techniques are broadly applicable to other data types.
URL:https://qcb.ucla.edu/event/digital-imaging-processing-in-python-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_11_06-Digital-Imaging-Processing-in-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181105T160000
DTEND;TZID=America/Los_Angeles:20181105T170000
DTSTAMP:20260618T132321
CREATED:20181031T182635Z
LAST-MODIFIED:20181031T184635Z
UID:7977-1541433600-1541437200@qcb.ucla.edu
SUMMARY:Michael Gandal\, "Leveraging Human Brain Transcriptomics to Identify a Convergent Molecular Pathology of Psychiatric Disease"
DESCRIPTION:Michael Gandal\nLeveraging Human Brain Transcriptomics to Identify a Convergent Molecular Pathology of Psychiatric Disease\nMonday November 5\nBioinformatics Seminar Series\n4pm
URL:https://qcb.ucla.edu/event/michael-gandal-leveraging-human-brain-transcriptomics-to-identify-a-convergent-molecular-pathology-of-psychiatric-disease/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181101T120000
DTEND;TZID=America/Los_Angeles:20181101T130000
DTSTAMP:20260618T132321
CREATED:20181031T191008Z
LAST-MODIFIED:20181031T191008Z
UID:7993-1541073600-1541077200@qcb.ucla.edu
SUMMARY:K.Kirk Shung\, Ph.D.\, "Acoustic tweezer and its biomedical Applications"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/k-kirk-shung-ph-d-acoustic-tweezer-and-its-biomedical-applications/
LOCATION:CA
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181101T093000
DTEND;TZID=America/Los_Angeles:20181101T123000
DTSTAMP:20260618T132321
CREATED:20180823T210754Z
LAST-MODIFIED:20180910T174910Z
UID:7311-1541064600-1541075400@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day Three
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-three/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_10_30-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181031T130000
DTEND;TZID=America/Los_Angeles:20181031T150000
DTSTAMP:20260618T132321
CREATED:20180823T210756Z
LAST-MODIFIED:20180910T174910Z
UID:7313-1540990800-1540998000@qcb.ucla.edu
SUMMARY:Single-Cell RNA-Seq - Day Two
DESCRIPTION:RNA sequencing of single cells (scRNA-seq) provides a high-resolution view of cellular differences and function. First\, this workshop introduces the basic concepts and data analysis tools for single-cell RNA-seq techniques. Next\, this workshop covers the important applications of scRNA-seq\, the important considerations in designing a scRNA-seq experiment\, the major differences between popular technical platforms\, and the main steps in preliminary data analysis. This workshop can serve as a starting point to conceive a scRNA-seq study or to analyze a scRNA-seq dataset.
URL:https://qcb.ucla.edu/event/single-cell-rna-seq-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_10_30-scRNAseq.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181031T093000
DTEND;TZID=America/Los_Angeles:20181031T123000
DTSTAMP:20260618T132321
CREATED:20180823T210753Z
LAST-MODIFIED:20180910T174910Z
UID:7310-1540978200-1540989000@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day Two
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_10_30-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181030T130000
DTEND;TZID=America/Los_Angeles:20181030T150000
DTSTAMP:20260618T132321
CREATED:20180823T210755Z
LAST-MODIFIED:20180910T174910Z
UID:7312-1540904400-1540911600@qcb.ucla.edu
SUMMARY:Single-Cell RNA-Seq - Day One
DESCRIPTION:RNA sequencing of single cells (scRNA-seq) provides a high-resolution view of cellular differences and function. First\, this workshop introduces the basic concepts and data analysis tools for single-cell RNA-seq techniques. Next\, this workshop covers the important applications of scRNA-seq\, the important considerations in designing a scRNA-seq experiment\, the major differences between popular technical platforms\, and the main steps in preliminary data analysis. This workshop can serve as a starting point to conceive a scRNA-seq study or to analyze a scRNA-seq dataset.
URL:https://qcb.ucla.edu/event/single-cell-rna-seq-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://wp-misc.lifesci.ucla.edu/qcb/wp-content/uploads/sites/14/2018/08/2018_10_30-scRNAseq.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
END:VCALENDAR