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X-ORIGINAL-URL:https://qcb.ucla.edu
X-WR-CALDESC:Events for Institute for Quantitative and Computational Biosciences
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BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181101T093000
DTEND;TZID=America/Los_Angeles:20181101T123000
DTSTAMP:20180910T174910Z
CREATED:20180823T210754Z
LAST-MODIFIED:20180910T174910Z
UID:7311-1541064600-1541075400@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day Three
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-three/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_10_30-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181101T120000
DTEND;TZID=America/Los_Angeles:20181101T130000
DTSTAMP:20181031T191008Z
CREATED:20181031T191008Z
LAST-MODIFIED:20181031T191008Z
UID:7993-1541073600-1541077200@qcb.ucla.edu
SUMMARY:K.Kirk Shung\, Ph.D.\, "Acoustic tweezer and its biomedical Applications"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/k-kirk-shung-ph-d-acoustic-tweezer-and-its-biomedical-applications/
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181105T160000
DTEND;TZID=America/Los_Angeles:20181105T170000
DTSTAMP:20181031T184635Z
CREATED:20181031T182635Z
LAST-MODIFIED:20181031T184635Z
UID:7977-1541433600-1541437200@qcb.ucla.edu
SUMMARY:Michael Gandal\, "Leveraging Human Brain Transcriptomics to Identify a Convergent Molecular Pathology of Psychiatric Disease"
DESCRIPTION:Michael Gandal\nLeveraging Human Brain Transcriptomics to Identify a Convergent Molecular Pathology of Psychiatric Disease\nMonday November 5\nBioinformatics Seminar Series\n4pm
URL:https://qcb.ucla.edu/event/michael-gandal-leveraging-human-brain-transcriptomics-to-identify-a-convergent-molecular-pathology-of-psychiatric-disease/
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181106T093000
DTEND;TZID=America/Los_Angeles:20181106T123000
DTSTAMP:20180910T175014Z
CREATED:20180823T210756Z
LAST-MODIFIED:20180910T175014Z
UID:7314-1541496600-1541507400@qcb.ucla.edu
SUMMARY:Digital Imaging Processing in Python - Day One
DESCRIPTION:Imaging datasets are becoming easier to acquire yet more difficult to analyze. First\, this workshop introduces computational tools available for manipulating images and extracting quantitative information. Next\, this workshop covers image conversion and handling in Python\, different methods for normalizing\, aligning and segmenting images\, and applying these techniques to a full image processing pipeline. We will focus on cellular imaging; however\, much of the techniques are broadly applicable to other data types.
URL:https://qcb.ucla.edu/event/digital-imaging-processing-in-python-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_06-Digital-Imaging-Processing-in-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181106T130000
DTEND;TZID=America/Los_Angeles:20181106T150000
DTSTAMP:20180910T175014Z
CREATED:20180823T210759Z
LAST-MODIFIED:20180910T175014Z
UID:7317-1541509200-1541516400@qcb.ucla.edu
SUMMARY:MATLAB - Day One
DESCRIPTION:MATLAB is a powerful\, high-level programing language for numerical computation\, visualization\, and application development. First\, this workshop introduces the MATLAB environment. Next\, this workshop covers working with arrays and matrices\, loops and conditional statements\, writing your own functions\, working with files\, and visualizing your data. We will use MATLAB to solve differential equations and conduct basic computational systems modeling. This workshop is suitable for those with or without coding experience in other languages. No computational knowledge is assumed and no prerequisite workshops are required; however\, the Unix workshop (workshop 1) may be a useful foundation.
URL:https://qcb.ucla.edu/event/matlab-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_06-MATLAB.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181107T093000
DTEND;TZID=America/Los_Angeles:20181107T123000
DTSTAMP:20180910T175014Z
CREATED:20180823T210757Z
LAST-MODIFIED:20180910T175014Z
UID:7315-1541583000-1541593800@qcb.ucla.edu
SUMMARY:Digital Imaging Processing in Python - Day Two
DESCRIPTION:Imaging datasets are becoming easier to acquire yet more difficult to analyze. First\, this workshop introduces computational tools available for manipulating images and extracting quantitative information. Next\, this workshop covers image conversion and handling in Python\, different methods for normalizing\, aligning and segmenting images\, and applying these techniques to a full image processing pipeline. We will focus on cellular imaging; however\, much of the techniques are broadly applicable to other data types.
URL:https://qcb.ucla.edu/event/digital-imaging-processing-in-python-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_06-Digital-Imaging-Processing-in-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181107T130000
DTEND;TZID=America/Los_Angeles:20181107T150000
DTSTAMP:20180910T175014Z
CREATED:20180823T210800Z
LAST-MODIFIED:20180910T175014Z
UID:7318-1541595600-1541602800@qcb.ucla.edu
SUMMARY:MATLAB - Day Two
DESCRIPTION:MATLAB is a powerful\, high-level programing language for numerical computation\, visualization\, and application development. First\, this workshop introduces the MATLAB environment. Next\, this workshop covers working with arrays and matrices\, loops and conditional statements\, writing your own functions\, working with files\, and visualizing your data. We will use MATLAB to solve differential equations and conduct basic computational systems modeling. This workshop is suitable for those with or without coding experience in other languages. No computational knowledge is assumed and no prerequisite workshops are required; however\, the Unix workshop (workshop 1) may be a useful foundation.
URL:https://qcb.ucla.edu/event/matlab-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_06-MATLAB.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181108T093000
DTEND;TZID=America/Los_Angeles:20181108T123000
DTSTAMP:20180910T175013Z
CREATED:20180823T210758Z
LAST-MODIFIED:20180910T175013Z
UID:7316-1541669400-1541680200@qcb.ucla.edu
SUMMARY:Digital Imaging Processing in Python - Day Three
DESCRIPTION:Imaging datasets are becoming easier to acquire yet more difficult to analyze. First\, this workshop introduces computational tools available for manipulating images and extracting quantitative information. Next\, this workshop covers image conversion and handling in Python\, different methods for normalizing\, aligning and segmenting images\, and applying these techniques to a full image processing pipeline. We will focus on cellular imaging; however\, much of the techniques are broadly applicable to other data types.
URL:https://qcb.ucla.edu/event/digital-imaging-processing-in-python-day-three/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_06-Digital-Imaging-Processing-in-Python.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181108T120000
DTEND;TZID=America/Los_Angeles:20181108T130000
DTSTAMP:20181031T191158Z
CREATED:20181031T191127Z
LAST-MODIFIED:20181031T191158Z
UID:7996-1541678400-1541682000@qcb.ucla.edu
SUMMARY:Weihong Tan\, Ph.D.\, "The foundation of molecular medicine: A chemical biology approach "
DESCRIPTION:
URL:https://qcb.ucla.edu/event/weihong-tan-ph-d-the-foundation-of-molecular-medicine-a-chemical-biology-approach/
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181108T130000
DTEND;TZID=America/Los_Angeles:20181108T150000
DTSTAMP:20180910T175013Z
CREATED:20180823T210801Z
LAST-MODIFIED:20180910T175013Z
UID:7319-1541682000-1541689200@qcb.ucla.edu
SUMMARY:MATLAB - Day Three
DESCRIPTION:MATLAB is a powerful\, high-level programing language for numerical computation\, visualization\, and application development. First\, this workshop introduces the MATLAB environment. Next\, this workshop covers working with arrays and matrices\, loops and conditional statements\, writing your own functions\, working with files\, and visualizing your data. We will use MATLAB to solve differential equations and conduct basic computational systems modeling. This workshop is suitable for those with or without coding experience in other languages. No computational knowledge is assumed and no prerequisite workshops are required; however\, the Unix workshop (workshop 1) may be a useful foundation.
URL:https://qcb.ucla.edu/event/matlab-day-three/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_06-MATLAB.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181113T090000
DTEND;TZID=America/Los_Angeles:20181113T160000
DTSTAMP:20180910T174910Z
CREATED:20180823T210801Z
LAST-MODIFIED:20180910T174910Z
UID:7320-1542099600-1542124800@qcb.ucla.edu
SUMMARY:UCSC Genome Browser Workshop - Day One
DESCRIPTION:Established in 2000\, the UCSC Genome Browser is great tool for visualizing your data alongside a ton of data from all over the place. The Genome Browser now features a broad collection of vertebrate and model organism assemblies and annotations\, along with a large suite of tools for viewing\, analyzing and downloading data. QCB Collaboratory hosts a workshop\, conducted by Dr. Robert Kuhn\, that is tailored to the specific needs and skill levels of our audience
URL:https://qcb.ucla.edu/event/ucsc-genome-browser-workshop-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_13-UCSC-Genome-Browser.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181114T090000
DTEND;TZID=America/Los_Angeles:20181114T160000
DTSTAMP:20180910T174909Z
CREATED:20180823T210802Z
LAST-MODIFIED:20180910T174909Z
UID:7321-1542186000-1542211200@qcb.ucla.edu
SUMMARY:UCSC Genome Browser Workshop - Day Two
DESCRIPTION:Established in 2000\, the UCSC Genome Browser is great tool for visualizing your data alongside a ton of data from all over the place. The Genome Browser now features a broad collection of vertebrate and model organism assemblies and annotations\, along with a large suite of tools for viewing\, analyzing and downloading data. QCB Collaboratory hosts a workshop\, conducted by Dr. Robert Kuhn\, that is tailored to the specific needs and skill levels of our audience
URL:https://qcb.ucla.edu/event/ucsc-genome-browser-workshop-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_13-UCSC-Genome-Browser.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181115T093000
DTEND;TZID=America/Los_Angeles:20181115T123000
DTSTAMP:20180910T174909Z
CREATED:20180823T210805Z
LAST-MODIFIED:20180910T174909Z
UID:7324-1542274200-1542285000@qcb.ucla.edu
SUMMARY:Making GATK Work for You - Day One
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/making-gatk-work-for-you-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_15-Making-GATK-Work-for-You.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181115T120000
DTEND;TZID=America/Los_Angeles:20181115T130000
DTSTAMP:20181031T191326Z
CREATED:20181031T191326Z
LAST-MODIFIED:20181031T191326Z
UID:7999-1542283200-1542286800@qcb.ucla.edu
SUMMARY:Bin He\, Ph.D. \, "Dynamic Mapping & Interfacing with the Brain"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/bin-he-ph-d-dynamic-mapping-interfacing-with-the-brain/
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181115T130000
DTEND;TZID=America/Los_Angeles:20181115T150000
DTSTAMP:20180921T174901Z
CREATED:20180823T210803Z
LAST-MODIFIED:20180921T174901Z
UID:7322-1542286800-1542294000@qcb.ucla.edu
SUMMARY:Galaxy for NGS Data Analysis - Day One
DESCRIPTION:Galaxy is a web-based infrastructure for bioinformatics application. First\, this workshop introduces participants to using Galaxy for analysis of Next-Generation Sequencing data. Next\, this workshop covers the structure of Galaxy\, data format and manipulation\, obtaining and sharing data\, and building and sharing workflows. We will use the tools installed on the UCLA galaxy to perform a few types of NGS analysis.
URL:https://qcb.ucla.edu/event/galaxy-for-ngs-data-analysis-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_13-Analyze-NGS-Data-with-Galaxy.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181116T093000
DTEND;TZID=America/Los_Angeles:20181116T123000
DTSTAMP:20180910T174909Z
CREATED:20180823T210806Z
LAST-MODIFIED:20180910T174909Z
UID:7325-1542360600-1542371400@qcb.ucla.edu
SUMMARY:Making GATK Work for You - Day Two
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/making-gatk-work-for-you-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_15-Making-GATK-Work-for-You.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181116T130000
DTEND;TZID=America/Los_Angeles:20181116T150000
DTSTAMP:20180921T174911Z
CREATED:20180823T210804Z
LAST-MODIFIED:20180921T174911Z
UID:7323-1542373200-1542380400@qcb.ucla.edu
SUMMARY:Galaxy for NGS Data Analysis - Day Two
DESCRIPTION:Galaxy is a web-based infrastructure for bioinformatics application. First\, this workshop introduces participants to using Galaxy for analysis of Next-Generation Sequencing data. Next\, this workshop covers the structure of Galaxy\, data format and manipulation\, obtaining and sharing data\, and building and sharing workflows. We will use the tools installed on the UCLA galaxy to perform a few types of NGS analysis.
URL:https://qcb.ucla.edu/event/galaxy-for-ngs-data-analysis-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/08/2018_11_13-Analyze-NGS-Data-with-Galaxy.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181119T110000
DTEND;TZID=America/Los_Angeles:20181119T120000
DTSTAMP:20181031T190528Z
CREATED:20181031T190528Z
LAST-MODIFIED:20181031T190528Z
UID:7987-1542625200-1542628800@qcb.ucla.edu
SUMMARY:Luis Quintana-Murci\, "Human (epi)genetic adaption to pathogens and infectious diseases"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/luis-quintana-murci-human-epigenetic-adaption-to-pathogens-and-infectious-diseases/
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181119T160000
DTEND;TZID=America/Los_Angeles:20181119T170000
DTSTAMP:20181031T185906Z
CREATED:20181031T185814Z
LAST-MODIFIED:20181031T185906Z
UID:7981-1542643200-1542646800@qcb.ucla.edu
SUMMARY:Ferhat Ay\, "Characterizing Distal Enhancer Landscapes of Human Immune Cells with (Fit)HiChIp"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/ferhat-ay-characterizing-distal-enhancer-landscapes-of-human-immune-cells-with-fithichip/
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181126T160000
DTEND;TZID=America/Los_Angeles:20181126T170000
DTSTAMP:20181031T190303Z
CREATED:20181031T190204Z
LAST-MODIFIED:20181031T190303Z
UID:7984-1543248000-1543251600@qcb.ucla.edu
SUMMARY:Paul Boutros\, Title TBA\, Bioinformatics Seminar Series
DESCRIPTION:
URL:https://qcb.ucla.edu/event/paul-boutros-title-tba-bioinformatics-seminar-series/
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20181129T120000
DTEND;TZID=America/Los_Angeles:20181129T130000
DTSTAMP:20181031T194635Z
CREATED:20181031T191521Z
LAST-MODIFIED:20181031T194635Z
UID:8002-1543492800-1543496400@qcb.ucla.edu
SUMMARY:X. Edward Guo\, Ph.D.\, "Bioengineering: Microstructure\, Mechanics\, Mechanobiology\, and Beyond"
DESCRIPTION:
URL:https://qcb.ucla.edu/event/x-edward-guo-ph-d-bioengineering-microstructure-mechanics-mechanobiology-and-beyond/
CATEGORIES:Bioinformatics Weekly Seminar
END:VEVENT
END:VCALENDAR