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X-ORIGINAL-URL:https://qcb.ucla.edu
X-WR-CALDESC:Events for Institute for Quantitative and Computational Biosciences
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DTSTART;TZID=America/Los_Angeles:20190108T090000
DTEND;TZID=America/Los_Angeles:20190108T120000
DTSTAMP:20181115T003249Z
CREATED:20181108T195330Z
LAST-MODIFIED:20181115T003249Z
UID:8047-1546938000-1546948800@qcb.ucla.edu
SUMMARY:Using NGS Analysis Tools - Day One
DESCRIPTION:High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First\, this workshop introduces the more ÒuniversalÓ aspects of high-throughput sequence analysisÑfrom experimental design to sequencing and alignment methods. Next\, this workshop covers common file formats for sequence data and limitations of sequencing technologies. We will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data\, clean artifact and low-quality sequences\, and align short reads to a reference genome. At the end of this workshop\, students will better understand the logic behind how many of these steps work. Students who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement\, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.
URL:https://qcb.ucla.edu/event/using-ngs-analysis-tools-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-01-Using-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190109T090000
DTEND;TZID=America/Los_Angeles:20190109T120000
DTSTAMP:20181115T003245Z
CREATED:20181108T195331Z
LAST-MODIFIED:20181115T003245Z
UID:8048-1547024400-1547035200@qcb.ucla.edu
SUMMARY:Using NGS Analysis Tools - Day Two
DESCRIPTION:High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First\, this workshop introduces the more ÒuniversalÓ aspects of high-throughput sequence analysisÑfrom experimental design to sequencing and alignment methods. Next\, this workshop covers common file formats for sequence data and limitations of sequencing technologies. We will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data\, clean artifact and low-quality sequences\, and align short reads to a reference genome. At the end of this workshop\, students will better understand the logic behind how many of these steps work. Students who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement\, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.
URL:https://qcb.ucla.edu/event/using-ngs-analysis-tools-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-01-Using-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190110T090000
DTEND;TZID=America/Los_Angeles:20190110T120000
DTSTAMP:20181115T003240Z
CREATED:20181108T195332Z
LAST-MODIFIED:20181115T003240Z
UID:8049-1547110800-1547121600@qcb.ucla.edu
SUMMARY:Using NGS Analysis Tools - Day Three
DESCRIPTION:High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First\, this workshop introduces the more ÒuniversalÓ aspects of high-throughput sequence analysisÑfrom experimental design to sequencing and alignment methods. Next\, this workshop covers common file formats for sequence data and limitations of sequencing technologies. We will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data\, clean artifact and low-quality sequences\, and align short reads to a reference genome. At the end of this workshop\, students will better understand the logic behind how many of these steps work. Students who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement\, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.
URL:https://qcb.ucla.edu/event/using-ngs-analysis-tools-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-01-Using-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190115T090000
DTEND;TZID=America/Los_Angeles:20190115T120000
DTSTAMP:20181115T003134Z
CREATED:20181108T195339Z
LAST-MODIFIED:20181115T003134Z
UID:8053-1547542800-1547553600@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day One
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-03-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190116T090000
DTEND;TZID=America/Los_Angeles:20190116T120000
DTSTAMP:20181115T003130Z
CREATED:20181108T195339Z
LAST-MODIFIED:20181115T003130Z
UID:8054-1547629200-1547640000@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day Two
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-03-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190117T090000
DTEND;TZID=America/Los_Angeles:20190117T120000
DTSTAMP:20181115T003123Z
CREATED:20181108T195340Z
LAST-MODIFIED:20181115T003123Z
UID:8055-1547715600-1547726400@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day Three
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-03-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190129T090000
DTEND;TZID=America/Los_Angeles:20190129T120000
DTSTAMP:20181115T002910Z
CREATED:20181108T195350Z
LAST-MODIFIED:20181115T002910Z
UID:8065-1548752400-1548763200@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis I - Day One
DESCRIPTION:RNA sequencing is used to examine the continuously changing cellular transcriptome. First\, this workshop provides an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). This workshop can serve as a starting point to develop a gene expression project. To facilitate learning\, we will explore a hands-on tutorial that guides students in processing the data from raw reads through read counts. We will use a real-case study-based approach appropriate for Illumina read data.
URL:https://qcb.ucla.edu/event/rna-seq-analysis-i-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-07-RNA-seq-I.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190130T090000
DTEND;TZID=America/Los_Angeles:20190130T120000
DTSTAMP:20181115T002900Z
CREATED:20181108T195350Z
LAST-MODIFIED:20181115T002900Z
UID:8066-1548838800-1548849600@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis I - Day Two
DESCRIPTION:RNA sequencing is used to examine the continuously changing cellular transcriptome. First\, this workshop provides an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). This workshop can serve as a starting point to develop a gene expression project. To facilitate learning\, we will explore a hands-on tutorial that guides students in processing the data from raw reads through read counts. We will use a real-case study-based approach appropriate for Illumina read data.
URL:https://qcb.ucla.edu/event/rna-seq-analysis-i-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-07-RNA-seq-I.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190131T090000
DTEND;TZID=America/Los_Angeles:20190131T120000
DTSTAMP:20181115T002850Z
CREATED:20181108T195352Z
LAST-MODIFIED:20181115T002850Z
UID:8067-1548925200-1548936000@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis I - Day Three
DESCRIPTION:RNA sequencing is used to examine the continuously changing cellular transcriptome. First\, this workshop provides an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). This workshop can serve as a starting point to develop a gene expression project. To facilitate learning\, we will explore a hands-on tutorial that guides students in processing the data from raw reads through read counts. We will use a real-case study-based approach appropriate for Illumina read data.
URL:https://qcb.ucla.edu/event/rna-seq-analysis-i-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-07-RNA-seq-I.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
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