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X-ORIGINAL-URL:https://qcb.ucla.edu
X-WR-CALDESC:Events for Institute for Quantitative and Computational Biosciences
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BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190205T093000
DTEND;TZID=America/Los_Angeles:20190205T113000
DTSTAMP:20181115T002628Z
CREATED:20181108T195359Z
LAST-MODIFIED:20181115T002628Z
UID:8074-1549359000-1549366200@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis II - Day One
DESCRIPTION:RNA sequencing uses next-generation sequencing to reveal the presence and quantity of RNA in a biological sample at a given moment. First\, this workshop introduces key tools developed for analysis of gene expression data from read counts to biology using R. To facilitate learning\, we will use a real case-study-based approach appropriate for Illumina read data (same as RNA-seq I).
URL:https://qcb.ucla.edu/event/rna-seq-analysis-ii-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-10-RNA-seq-II.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
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BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190206T130000
DTEND;TZID=America/Los_Angeles:20190206T160000
DTSTAMP:20181115T002651Z
CREATED:20181108T195358Z
LAST-MODIFIED:20181115T002651Z
UID:8073-1549458000-1549468800@qcb.ucla.edu
SUMMARY:Introduction to Phylogenetics - Day Three
DESCRIPTION:This workshop presents the scientific basis behind the different approaches in phylogenetics and the tools used for these analyses. Practical aspects of the use of these tools will be discussed.
URL:https://qcb.ucla.edu/event/introduction-to-phylogenetics-day-three/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-09-Intro-to-Phylogenetics.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190207T093000
DTEND;TZID=America/Los_Angeles:20190207T113000
DTSTAMP:20181115T002609Z
CREATED:20181108T195400Z
LAST-MODIFIED:20181115T002609Z
UID:8075-1549531800-1549539000@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis II - Day Two
DESCRIPTION:RNA sequencing uses next-generation sequencing to reveal the presence and quantity of RNA in a biological sample at a given moment. First\, this workshop introduces key tools developed for analysis of gene expression data from read counts to biology using R. To facilitate learning\, we will use a real case-study-based approach appropriate for Illumina read data (same as RNA-seq I).
URL:https://qcb.ucla.edu/event/rna-seq-analysis-ii-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-10-RNA-seq-II.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190212T133000
DTEND;TZID=America/Los_Angeles:20190212T153000
DTSTAMP:20181115T002447Z
CREATED:20181108T195403Z
LAST-MODIFIED:20181115T002447Z
UID:8079-1549978200-1549985400@qcb.ucla.edu
SUMMARY:Metagenomics Analysis - Day One
DESCRIPTION:This workshop provides an introduction to the microbiome analyses from the raw sequence data generated from the next-generation sequencing platforms. We will cover how to perform the 16S rRNA-based analysis using an open-source bioinformatics pipeline QIIME. We will also cover some downstream analyses of the microbiome data beyond QIIME\, including statistical analyses and functional analyses.
URL:https://qcb.ucla.edu/event/metagenomics-analysis-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-12-Metagenomics.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190213T133000
DTEND;TZID=America/Los_Angeles:20190213T153000
DTSTAMP:20181115T002432Z
CREATED:20181108T195404Z
LAST-MODIFIED:20181115T002432Z
UID:8080-1550064600-1550071800@qcb.ucla.edu
SUMMARY:Metagenomics Analysis - Day Two
DESCRIPTION:This workshop provides an introduction to the microbiome analyses from the raw sequence data generated from the next-generation sequencing platforms. We will cover how to perform the 16S rRNA-based analysis using an open-source bioinformatics pipeline QIIME. We will also cover some downstream analyses of the microbiome data beyond QIIME\, including statistical analyses and functional analyses.
URL:https://qcb.ucla.edu/event/metagenomics-analysis-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-12-Metagenomics.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190214T133000
DTEND;TZID=America/Los_Angeles:20190214T153000
DTSTAMP:20181115T002413Z
CREATED:20181108T195405Z
LAST-MODIFIED:20181115T002413Z
UID:8081-1550151000-1550158200@qcb.ucla.edu
SUMMARY:Metagenomics Analysis - Day Three
DESCRIPTION:This workshop provides an introduction to the microbiome analyses from the raw sequence data generated from the next-generation sequencing platforms. We will cover how to perform the 16S rRNA-based analysis using an open-source bioinformatics pipeline QIIME. We will also cover some downstream analyses of the microbiome data beyond QIIME\, including statistical analyses and functional analyses.
URL:https://qcb.ucla.edu/event/metagenomics-analysis-day-three/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-12-Metagenomics.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190226T090000
DTEND;TZID=America/Los_Angeles:20190226T120000
DTSTAMP:20181115T002244Z
CREATED:20181108T195409Z
LAST-MODIFIED:20181115T002244Z
UID:8085-1551171600-1551182400@qcb.ucla.edu
SUMMARY:Variant Discovery with GATK - Day One
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/variant-discovery-with-gatk-day-one/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-14-Variant-Discovery.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190227T090000
DTEND;TZID=America/Los_Angeles:20190227T120000
DTSTAMP:20181115T002230Z
CREATED:20181108T195410Z
LAST-MODIFIED:20181115T002230Z
UID:8086-1551258000-1551268800@qcb.ucla.edu
SUMMARY:Variant Discovery with GATK - Day Two
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/variant-discovery-with-gatk-day-two/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-14-Variant-Discovery.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190228T090000
DTEND;TZID=America/Los_Angeles:20190228T120000
DTSTAMP:20181115T002214Z
CREATED:20181108T195412Z
LAST-MODIFIED:20181115T002214Z
UID:8087-1551344400-1551355200@qcb.ucla.edu
SUMMARY:Variant Discovery with GATK - Day Three
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/variant-discovery-with-gatk-day-three/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2018/11/W19-14-Variant-Discovery.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
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