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X-WR-CALNAME:Institute for Quantitative and Computational Biosciences
X-ORIGINAL-URL:https://qcb.ucla.edu
X-WR-CALDESC:Events for Institute for Quantitative and Computational Biosciences
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DTSTART:20180311T100000
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BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190501T133000
DTEND;TZID=America/Los_Angeles:20190501T153000
DTSTAMP:20190226T203620Z
CREATED:20190226T194846Z
LAST-MODIFIED:20190226T203620Z
UID:8911-1556717400-1556724600@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis I - Day Two
DESCRIPTION:RNA sequencing is used to examine the continuously changing cellular transcriptome. First\, this workshop provides an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). This workshop can serve as a starting point to develop a gene expression project. To facilitate learning\, we will explore a hands-on tutorial that guides students in processing the data from raw reads through read counts. We will use a real-case study-based approach appropriate for Illumina read data.
URL:https://qcb.ucla.edu/event/rna-seq-analysis-i-day-two-3/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-10-W5a-RNAseq-I.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190502T133000
DTEND;TZID=America/Los_Angeles:20190502T153000
DTSTAMP:20190226T203736Z
CREATED:20190226T194846Z
LAST-MODIFIED:20190226T203736Z
UID:8912-1556803800-1556811000@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis I - Day Three
DESCRIPTION:RNA sequencing is used to examine the continuously changing cellular transcriptome. First\, this workshop provides an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). This workshop can serve as a starting point to develop a gene expression project. To facilitate learning\, we will explore a hands-on tutorial that guides students in processing the data from raw reads through read counts. We will use a real-case study-based approach appropriate for Illumina read data.
URL:https://qcb.ucla.edu/event/rna-seq-analysis-i-day-three-3/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-10-W5a-RNAseq-I.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190507T100000
DTEND;TZID=America/Los_Angeles:20190507T120000
DTSTAMP:20190226T203826Z
CREATED:20190226T194847Z
LAST-MODIFIED:20190226T203826Z
UID:8913-1557223200-1557230400@qcb.ucla.edu
SUMMARY:Metagenomics Analysis - Day One
DESCRIPTION:This workshop provides an introduction to the microbiome analyses from the raw sequence data generated from the next-generation sequencing platforms. We will cover how to perform the 16S rRNA-based analysis using an open-source bioinformatics pipeline QIIME. We will also cover some downstream analyses of the microbiome data beyond QIIME\, including statistical analyses and functional analyses.
URL:https://qcb.ucla.edu/event/metagenomics-analysis-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-11-W11-Metagenomics.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190507T133000
DTEND;TZID=America/Los_Angeles:20190507T153000
DTSTAMP:20190226T203857Z
CREATED:20190226T194848Z
LAST-MODIFIED:20190226T203857Z
UID:8916-1557235800-1557243000@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis II - Day One
DESCRIPTION:RNA sequencing uses next-generation sequencing to reveal the presence and quantity of RNA in a biological sample at a given moment. First\, this workshop introduces key tools developed for analysis of gene expression data from read counts to biology using R. To facilitate learning\, we will use a real case-study-based approach appropriate for Illumina read data (same as RNA-seq I).
URL:https://qcb.ucla.edu/event/rna-seq-analysis-ii-day-one-3/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-12-W5b-RNAseq-II.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190508T100000
DTEND;TZID=America/Los_Angeles:20190508T120000
DTSTAMP:20190226T203928Z
CREATED:20190226T194848Z
LAST-MODIFIED:20190226T203928Z
UID:8914-1557309600-1557316800@qcb.ucla.edu
SUMMARY:Metagenomics Analysis - Day Two
DESCRIPTION:This workshop provides an introduction to the microbiome analyses from the raw sequence data generated from the next-generation sequencing platforms. We will cover how to perform the 16S rRNA-based analysis using an open-source bioinformatics pipeline QIIME. We will also cover some downstream analyses of the microbiome data beyond QIIME\, including statistical analyses and functional analyses.
URL:https://qcb.ucla.edu/event/metagenomics-analysis-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-11-W11-Metagenomics.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190509T100000
DTEND;TZID=America/Los_Angeles:20190509T120000
DTSTAMP:20190226T204459Z
CREATED:20190226T194848Z
LAST-MODIFIED:20190226T204459Z
UID:8915-1557396000-1557403200@qcb.ucla.edu
SUMMARY:Metagenomics Analysis - Day Three
DESCRIPTION:This workshop provides an introduction to the microbiome analyses from the raw sequence data generated from the next-generation sequencing platforms. We will cover how to perform the 16S rRNA-based analysis using an open-source bioinformatics pipeline QIIME. We will also cover some downstream analyses of the microbiome data beyond QIIME\, including statistical analyses and functional analyses.
URL:https://qcb.ucla.edu/event/metagenomics-analysis-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-11-W11-Metagenomics.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190509T133000
DTEND;TZID=America/Los_Angeles:20190509T153000
DTSTAMP:20190226T204703Z
CREATED:20190226T194848Z
LAST-MODIFIED:20190226T204703Z
UID:8917-1557408600-1557415800@qcb.ucla.edu
SUMMARY:RNA-Seq Analysis II - Day Two
DESCRIPTION:RNA sequencing uses next-generation sequencing to reveal the presence and quantity of RNA in a biological sample at a given moment. First\, this workshop introduces key tools developed for analysis of gene expression data from read counts to biology using R. To facilitate learning\, we will use a real case-study-based approach appropriate for Illumina read data (same as RNA-seq I).
URL:https://qcb.ucla.edu/event/rna-seq-analysis-ii-day-two-3/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-12-W5b-RNAseq-II.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190514T093000
DTEND;TZID=America/Los_Angeles:20190514T123000
DTSTAMP:20190226T204732Z
CREATED:20190226T194849Z
LAST-MODIFIED:20190226T204732Z
UID:8918-1557826200-1557837000@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day One
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-one-3/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-13-W16-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190515T093000
DTEND;TZID=America/Los_Angeles:20190515T123000
DTSTAMP:20190226T204803Z
CREATED:20190226T194849Z
LAST-MODIFIED:20190226T204803Z
UID:8919-1557912600-1557923400@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day Two
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-two-3/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-13-W16-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190516T093000
DTEND;TZID=America/Los_Angeles:20190516T123000
DTSTAMP:20190226T204832Z
CREATED:20190226T194850Z
LAST-MODIFIED:20190226T204832Z
UID:8920-1557999000-1558009800@qcb.ucla.edu
SUMMARY:Library Prep for Next Generation Sequencing - Day Three
DESCRIPTION:Library preparation is a critical part of successful next generation sequencing analysis. This workshop introduces the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. We will explore different Library Preparation Techniques (DNA-seq\, ChIP-seq\, RNA-seq\, Methyl-seq). Next\, this workshop covers steps for performing Quality Control\, starting input material\, final libraries in the Lab (TapeStation)\, purification from Primer Dimers (using AMPure beads)\, and Library Submission.
URL:https://qcb.ucla.edu/event/library-prep-for-next-generation-sequencing-day-three-3/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-13-W16-Library-Prep-for-NGS.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190521T133000
DTEND;TZID=America/Los_Angeles:20190521T153000
DTSTAMP:20190227T174438Z
CREATED:20190226T194851Z
LAST-MODIFIED:20190227T174438Z
UID:8923-1558445400-1558452600@qcb.ucla.edu
SUMMARY:Variant Discovery with GATK - Day One
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/variant-discovery-with-gatk-day-one-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-15-W8-Variant-Discovery-w-GATK.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190522T133000
DTEND;TZID=America/Los_Angeles:20190522T153000
DTSTAMP:20190227T174350Z
CREATED:20190226T194851Z
LAST-MODIFIED:20190227T174350Z
UID:8924-1558531800-1558539000@qcb.ucla.edu
SUMMARY:Variant Discovery with GATK - Day Two
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/variant-discovery-with-gatk-day-two-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-15-W8-Variant-Discovery-w-GATK.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190523T133000
DTEND;TZID=America/Los_Angeles:20190523T153000
DTSTAMP:20190227T174413Z
CREATED:20190226T194851Z
LAST-MODIFIED:20190227T174413Z
UID:8925-1558618200-1558625400@qcb.ucla.edu
SUMMARY:Variant Discovery with GATK - Day Three
DESCRIPTION:This course is designed to take researchers with no genomic experience through variant calling based on the Broad InstituteÕs best practices for GATK. This workshop will be designed to take users from raw sequence data to called variants with emphasis placed on understanding when to apply the best practices or when a particular study or system dictates that you deviate from them. WeÕll emphasize reproducibility of data processing and combining data sets with shell scripts and for-loops to minimize accidental processing errors. By the end of the course\, students should feel comfortable working through their own data and have sufficient knowledge to know when and how to deviate from best practices.
URL:https://qcb.ucla.edu/event/variant-discovery-with-gatk-day-three-2/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-15-W8-Variant-Discovery-w-GATK.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190528T133000
DTEND;TZID=America/Los_Angeles:20190528T153000
DTSTAMP:20190226T205209Z
CREATED:20190226T194853Z
LAST-MODIFIED:20190226T205209Z
UID:8929-1559050200-1559057400@qcb.ucla.edu
SUMMARY:Galaxy for NGS Data Analysis - Day One
DESCRIPTION:Galaxy is a web-based infrastructure for bioinformatics application. First\, this workshop introduces participants to using Galaxy for analysis of Next-Generation Sequencing data. Next\, this workshop covers the structure of Galaxy\, data format and manipulation\, obtaining and sharing data\, and building and sharing workflows. We will use the tools installed on the UCLA galaxy to perform a few types of NGS analysis.
URL:https://qcb.ucla.edu/event/galaxy-for-ngs-data-analysis-day-one-3/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-17-W4-Galaxy-for-NGS-Data-Analysis.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=America/Los_Angeles:20190529T133000
DTEND;TZID=America/Los_Angeles:20190529T153000
DTSTAMP:20190226T205249Z
CREATED:20190226T194853Z
LAST-MODIFIED:20190226T205249Z
UID:8930-1559136600-1559143800@qcb.ucla.edu
SUMMARY:Galaxy for NGS Data Analysis - Day Two
DESCRIPTION:Galaxy is a web-based infrastructure for bioinformatics application. First\, this workshop introduces participants to using Galaxy for analysis of Next-Generation Sequencing data. Next\, this workshop covers the structure of Galaxy\, data format and manipulation\, obtaining and sharing data\, and building and sharing workflows. We will use the tools installed on the UCLA galaxy to perform a few types of NGS analysis.
URL:https://qcb.ucla.edu/event/galaxy-for-ngs-data-analysis-day-two-3/
LOCATION:The Collaboratory\, 610 Charles E Young Drive East - BOYER HALL ROOM 529\, Los Angeles\, CA\, 90095\, United States
CATEGORIES:Interactive Workshop
ATTACH;FMTTYPE=image/png:https://qcb.ucla.edu/wp-content/uploads/sites/14/2019/02/S19-17-W4-Galaxy-for-NGS-Data-Analysis.png
ORGANIZER;CN="QCB Collaboratory":MAILTO:collaboratory@ucla.edu
END:VEVENT
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