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W2: Using NGS Analysis Tools

January 16 @ 9:00 am - January 18 @ 12:00 pm

High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First, this workshop introduces the more “universal” aspects of high-throughput sequence analysis—from experimental design to sequencing and alignment methods. Next, this workshop covers common file formats for sequence data and limitations of sequencing technologies.

We will explore a hands-on exercise using the Hoffman2 cluster and will use programs designed to analyze read data, clean artifact and low-quality sequences, and align short reads to a reference genome. At the end of this workshop, students will better understand the logic behind how many of these steps work.

Students who are comfortable working with the command line will find this course significantly easier than those who are inexperienced in command-line interface. While Workshop 1 is not an absolute requirement, it is highly recommended for any student who is not already experienced working in a command line environment. A student who takes this workshop at the same time as Workshop 1 should not find any problems with timing of material between these two classes.

Details

Start:
January 16 @ 9:00 am
End:
January 18 @ 12:00 pm
Event Categories:
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Event Tags:
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Website:
https://qcb.ucla.edu/collaboratory-2/workshops/w2-using-ngs-analysis-tools/

Organizer

QCB Collaboratory
Phone
310-825-2917
Email
collaboratory@ucla.edu
View Organizer Website

Venue

529 Boyer Hall
611 Charles E Young Dr E,
Los Angeles, CA 90095 United States
+ Google Map
Phone
3108252917

Details

Start:
January 16 @ 9:00 am
End:
January 18 @ 12:00 pm
Event Categories:
,
Event Tags:
, ,
Website:
https://qcb.ucla.edu/collaboratory-2/workshops/w2-using-ngs-analysis-tools/

Organizer

QCB Collaboratory
Phone
310-825-2917
Email
collaboratory@ucla.edu
View Organizer Website

Venue

529 Boyer Hall
611 Charles E Young Dr E,
Los Angeles, CA 90095 United States
+ Google Map
Phone
3108252917