GALAXY:
R Programming:
- R-bloggers.com
- R-project.org – FAQ and manuals
- bioconductor.org
- UCLA ATS
- Quick R
- http://onertipaday.blogspot.com
- http://wiki.stdout.org/rcookbook
- http://gettinggeneticsdone.blogspot.com
- manuals.bioinformatics.ucr.edu/workshops
- UCLA Statistical Consulting Classes
- UCLA Statistical R resources
- stackoverflow.com – good site for help with R
Good free PDF/books on R:
Other books:
- An Introduction to R by Venables, Smith, R Core
- R in Action by Kabacoff
- R Cookbook by Teetor
General programming:
- Rosalind project – bioinformatics tutorials
- Software carpentry – tutorials on scientific computing, python, etc
Python programming:
- Code Academy – Python interactive tutorial
- Workshops w/ Hoffman2 Python
Protocols: