QCB Collaboratory conduct workshops tailored to individuals in the Biosciences Community who are interested in learning next generation sequencing and developing methodologies to process data. The topics include NGS data analysis of RNAseq, ChIPseq, BS-seq, Variant calling, etc. May also include splice isoform analysis, motif analysis, experimental design, network analysis of functional and physical networks, gene ontology, regulatory circuit modeling.

Workshops are held in the Collaboratory Classroom located in Boyer Hall room 529.

Workshop NameDateTimeInstructor
W1: Intro to Unix9/27/17 - 9/29/179:30am - 12:30pmSerghei Mangul, Ph.D.
W4: Galaxy9/27/17 - 9/28/171:00pm - 4:00pmWeihong Yan, Ph.D.
W2: Using NGS Analysis Tools10/3/17 - 10/5/179:30am - 12:30pmMichael Weinstein, Ph.D.
W18: Advanced Python10/3/17 - 10/5/171:30pm - 4:30pmMichael Weinstein, Ph.D.
W3: Intro to R10/10/17 - 10/12/179:30am - 12pmNick Mancuso, Ph.D.
W6: BS-seq10/10/17 - 10/12/171:00pm - 4:00pmFides Lay, Ph.D.
W12: Matlab10/17/17 - 10/19/179:30am - 11:30amSimon Mitchell, Ph.D.
W16: Library Prep for NGS10/17/17 - 10/18/171:00pm - 4:00pmMarco Morselli, Ph.D
W14: Intro to Modern Statistics10/24/17 - 10/26/179:30am - 11:30amDon Vaughn, Ph.D.
W19: Intro to Homology Modeling10/24/17 - 10/26/171:00pm - 3:00pmMarcus Gallagher-Jones, Ph.D.
W5a: RNA-seq I Analysis10/31/17 - 11/2/179:30am - 11:30amTrent Su, Ph.D
Alice Mouton, Ph.D
W15: RAD-seq10/31/17 - 11/2/171:00pm - 3:00pmYing Zhen, Ph.D.
W5b: RNA-seq II Analysis with R11/7/17 - 11/9/179:30am - 11:30amAlice Mouton, Ph.D.
Yerbol Kurmangaliev, Ph.D
W7: ChiP-seq11/7/17 - 11/9/171:00pm - 3:00pmDaria Merkurjev, Ph.D.
W9: Python11/14/17 - 11/16/179:30am - 11:30amRenaud Dessalles, Ph.D
W17: Machine Learning with Python11/28/17 - 11/30/17 9:30am - 12:30pmThiago Mosqueiro, Ph.D.
W10: Hi-C11/28/17 - 11/30/17 1:00pm - 4:00pmFides Lay, Ph.D.
W8: Variant Calling12/5/17 - 12/7/179:30am - 11:30amSorel Fitz-Gibbon, Ph.D.
W11: Metagenomics Analysis12/5/17 - 12/7/171:00pm - 3:00pmBaochen Shi, Ph.D.