Our Collaboratory Fellows have published papers on a variety of research topics, stemming from Collaboratory-supported collaborations across campus.

Find us on Google Scholar: https://scholar.google.com/citations?user=XN6DdggAAAAJ&hl=en

147 entries « 1 of 8 »
1.

Valentina Poli Francesco Borriello, Ellen Shrock

An adjuvant strategy enabled by modulation of the physical properties of microbial ligands expands antigen immunogenicity Bachelor Thesis

2022, ISBN: 0092-8674.

Abstract | Links | BibTeX

2.

Eric Y. Lin Paul C Adamson, Sung-Min Ha

Using a public database of Neisseria gonorrhoeae genomes to detect mutations associated with zoliflodacin resistance Journal Article

In: Journal of Antimicrobial Chemotherapy, (dkab262), 2021.

Abstract | Links | BibTeX

3.

Eric Y Lin Paul C Adamson, Sung-Min Ha

Using a public database of Neisseria gonorrhoeae genomes to detect mutations associated with zoliflodacin resistance Bachelor Thesis

2021.

Abstract | Links | BibTeX

4.

D. A. Vaughn, Maggiora

Modulation of attention and stress with arousal: The mental and physical effects of riding a motorcycle Journal Article

In: Brain Research, 1752 (147203), 2021.

Abstract | Links | BibTeX

5.

Perri, Angela R; Mitchell, Kieren J.; Mouton, Alice and

Dire wolves were the last of an ancient New World canid lineage Journal Article

In: Nature, 2021.

Abstract | Links | BibTeX

6.

Miikeda A Zhang W, Zuckerman J

Inhibition of microbiota-dependent TMAO production attenuates chronic kidney disease in mice. Bachelor Thesis

2021.

Abstract | Links | BibTeX

7.

K. E. Kaczor-Urbanowicz, Cheng

Reviews on Current Liquid Biopsy for Detection and Management of Pancreatic Cancers Bachelor Thesis

2020.

Abstract | Links | BibTeX

8.

D. A. Covino, Kaczor-Urbanowicz

Transcriptome Profiling of Human Monocyte-Derived Macrophages Upon CCL2 Neutralization Reveals an Association Between Activation of Innate Immune Pathways and Restriction of HIV-1 Gene Expression Bachelor Thesis

2020.

Abstract | Links | BibTeX

9.

M. Mediouni, Madiouni

COVID-19: How the quarantine could lead to the depreobesity Bachelor Thesis

2020.

Abstract | Links | BibTeX

10.

Karolina Elżbieta Kaczor-Urbanowicz Mohamed Mediouni, Riadh Madiouni

Future epidemic: Depreobesity Bachelor Thesis

2020.

Abstract | Links | BibTeX

11.

Leandro Bueno Bergantin Mohamed Mediouni, Riadh Madiouni

Can we represent the depreobesity genetically? Bachelor Thesis

2020, ISBN: 2451-8476.

Abstract | Links | BibTeX

12.

Eagleman, David M.; Vaughn, Don A.

The Defensive Activation theory: dreaming as a mechanism to prevent takeover of the visual cortex Journal Article

In: bioRxiv , 2020.

Abstract | Links | BibTeX

13.

Y. Lau, Ding

Omega-3 fatty acids increase OXPHOS energy for immune therapy of Alzheimer disease patients Bachelor Thesis

2020.

Abstract | Links | BibTeX

14.

Bhat, Kruttika; Saki, Mohammad; Vlashi, Erina; Cheng, Fei; Duhachek-Muggy, Sara; Alli, Claudia; Yu, Garrett; Medina, Paul; He, Ling; Damoiseaux, Robert; Pellegrini, Matteo; Zemke, Nathan R.; Nghiemphu, Phioanh Leia; Cloughesy, Timothy F.; Liau, Linda M.; Kornblum, Harley I.; Pajonk, Frank

The dopamine receptor antagonist trifluoperazine prevents phenotype conversion and improves survival in mouse models of glioblastoma Journal Article

In: Proceedings of the National Academy of Sciences , 32358191 , 2020.

Abstract | Links | BibTeX

15.

Lau YCC Fiala M, Aghajani A

Omega-3 Fatty Acids Increase Amyloid-β Immunity, Energy, and Circadian Rhythm for Cognitive Protection of Alzheimer's Disease Patients Beyond Cholinesterase Inhibitors Bachelor Thesis

2020.

Abstract | Links | BibTeX

16.

Neal, Adam S.; Nunez, Miguel; Lai, Tiffany; Tosevska, Anela; Morselli, Marco; Amneus, Malaika; Zakhour, Mae; Moatamed, Neda A.; Pellegrini, Matteo; Memarzadeh, Sanaz

Expression of Stromal Progesterone Receptor and Differential Methylation Patterns in the Endometrium May Correlate with Response to Progesterone Therapy in Endometrial Complex Atypical Hyperplasia. Journal Article

In: Reproductive Sciences, 2020.

Abstract | Links | BibTeX

17.

Brito, Jaqueline J; Mosqueiro, Thiago; Rotman, Jeremy; Xue, Victor; Chapski, Douglas J; la Hoz, Juan De; Matias, Paulo; Martin, Lana S; Zelikovsky, Alex; Pellegrini, Matteo; Mangul, Serghei

Telescope: an interactive tool for managing large-scale analysis from mobile devices Journal Article

In: GigaScience, 9 (1), 2020.

Abstract | Links | BibTeX

18.

Lozano‐Huntelman, Natalie Ann; Singh, Nina; Valencia, Alondra; Mira, Portia; Sakayan, Maral; Boucher, Ian; Tang, Sharon; Brennan, Kelley; Gianvecchio, Crystal; Fitz‐Gibbon, Sorel; Yeh, Pamela

Evolution of Antibiotic Cross‐resistance and Collateral Sensitivity in Staphylococcus Epidermidis Using the Mutant Prevention Concentration and the Mutant Selection Window Journal Article

In: Evolutionary Applications, 2019.

Abstract | Links | BibTeX

19.

Galmozzi, Andrea; Kok, Bernard P.; Kim, Arthur S.; Montenegro-Burke, J. Rafael; Lee, Jae Y.; Spreafico, Roberto; Mosure, Sarah; Albert, Verena; Cintron-Colon, Rigo; Godio, Cristina; Webb, William R.; Conti, Bruno; Solt, Laura A.; Kojetin, Douglas; Parker, Christopher G.; Peluso, John J.; Pru, James K.; Siuzdak, Gary; Cravatt, Benjamin F.; Saez, Enrique

PGRMC2 is an intracellular haem chaperone critical for adipocyte function Journal Article

In: 2019.

Abstract | Links | BibTeX

20.

Kurmangaliyev, Yerbol Z; Yoo, Juyoun; LoCascio, Samuel A; Zipursky, S Lawrence

Modular transcriptional programs separately define axon and dendrite connectivity. Journal Article

In: eLife, 2019.

Abstract | Links | BibTeX

147 entries « 1 of 8 »

147 entries « 1 of 3 »

2022

Valentina Poli Francesco Borriello, Ellen Shrock

An adjuvant strategy enabled by modulation of the physical properties of microbial ligands expands antigen immunogenicity Bachelor Thesis

2022, ISBN: 0092-8674.

Abstract | Links | BibTeX | Tags: coronavirus, Dectin, inflammation, influenza A virus, innate immunity, interferon, PAMP, pathogen-associated molecular pattern, pattern recognition receptor, PRR, SARS-CoV-2, viral glycoprotein

2021

Eric Y. Lin Paul C Adamson, Sung-Min Ha

Using a public database of Neisseria gonorrhoeae genomes to detect mutations associated with zoliflodacin resistance Journal Article

In: Journal of Antimicrobial Chemotherapy, (dkab262), 2021.

Abstract | Links | BibTeX | Tags: Antimicrobial resistance

Eric Y Lin Paul C Adamson, Sung-Min Ha

Using a public database of Neisseria gonorrhoeae genomes to detect mutations associated with zoliflodacin resistance Bachelor Thesis

2021.

Abstract | Links | BibTeX | Tags: amino acids, antibiotics, basic local alignment search tool, drug resistance, epidemiology, genome, gonococcal infection, malnutrition-inflammation-cachexia syndrome, medical, microbial, mutation, neisseria gonorrhoeae, surveillance, world health, zoliflodacin

D. A. Vaughn, Maggiora

Modulation of attention and stress with arousal: The mental and physical effects of riding a motorcycle Journal Article

In: Brain Research, 1752 (147203), 2021.

Abstract | Links | BibTeX | Tags: arousal., Modulation, stress

Perri, Angela R; Mitchell, Kieren J.; Mouton, Alice and

Dire wolves were the last of an ancient New World canid lineage Journal Article

In: Nature, 2021.

Abstract | Links | BibTeX | Tags: Evolutionary genetics, Palaeontology, Phylogenetics, Speciation

Miikeda A Zhang W, Zuckerman J

Inhibition of microbiota-dependent TMAO production attenuates chronic kidney disease in mice. Bachelor Thesis

2021.

Abstract | Links | BibTeX | Tags: Cardiology, Cell biology, Diseases, Molecular Biology, Nephrology

2020

K. E. Kaczor-Urbanowicz, Cheng

Reviews on Current Liquid Biopsy for Detection and Management of Pancreatic Cancers Bachelor Thesis

2020.

Abstract | Links | BibTeX | Tags: ctDNA, early detection, liquid biopsy, oncogenic mutations, pancreatic cancer

D. A. Covino, Kaczor-Urbanowicz

Transcriptome Profiling of Human Monocyte-Derived Macrophages Upon CCL2 Neutralization Reveals an Association Between Activation of Innate Immune Pathways and Restriction of HIV-1 Gene Expression Bachelor Thesis

2020.

Abstract | Links | BibTeX | Tags: CCL2 (MCP-1), HIV-1, innate response, macrophage, miR-155, NF-κB, RNA-sequencing, transcriptional profile

M. Mediouni, Madiouni

COVID-19: How the quarantine could lead to the depreobesity Bachelor Thesis

2020.

Abstract | Links | BibTeX | Tags: COVID‐19, Depreobesity, Depression, Obesity, Quarantine.

Karolina Elżbieta Kaczor-Urbanowicz Mohamed Mediouni, Riadh Madiouni

Future epidemic: Depreobesity Bachelor Thesis

2020.

Abstract | Links | BibTeX | Tags: Depreobesity, Depression, Epidemic, Obesity

Leandro Bueno Bergantin Mohamed Mediouni, Riadh Madiouni

Can we represent the depreobesity genetically? Bachelor Thesis

2020, ISBN: 2451-8476.

Abstract | Links | BibTeX | Tags: Depreobesity, Depression, genes, Obesity, Saliva

Eagleman, David M.; Vaughn, Don A.

The Defensive Activation theory: dreaming as a mechanism to prevent takeover of the visual cortex Journal Article

In: bioRxiv , 2020.

Abstract | Links | BibTeX | Tags: REM, visual cortex

Y. Lau, Ding

Omega-3 fatty acids increase OXPHOS energy for immune therapy of Alzheimer disease patients Bachelor Thesis

2020.

Abstract | Links | BibTeX | Tags: Amyloid-beta, citric acid cycle, glycolysis, mild cognitive impairment, omega-3 fatty acids, phagocytosis.

Bhat, Kruttika; Saki, Mohammad; Vlashi, Erina; Cheng, Fei; Duhachek-Muggy, Sara; Alli, Claudia; Yu, Garrett; Medina, Paul; He, Ling; Damoiseaux, Robert; Pellegrini, Matteo; Zemke, Nathan R.; Nghiemphu, Phioanh Leia; Cloughesy, Timothy F.; Liau, Linda M.; Kornblum, Harley I.; Pajonk, Frank

The dopamine receptor antagonist trifluoperazine prevents phenotype conversion and improves survival in mouse models of glioblastoma Journal Article

In: Proceedings of the National Academy of Sciences , 32358191 , 2020.

Abstract | Links | BibTeX | Tags: dedifferentiation; dopamine receptor antagonist; glioblastoma; glioma-initiating cells; radiation

Lau YCC Fiala M, Aghajani A

Omega-3 Fatty Acids Increase Amyloid-β Immunity, Energy, and Circadian Rhythm for Cognitive Protection of Alzheimer's Disease Patients Beyond Cholinesterase Inhibitors Bachelor Thesis

2020.

Abstract | Links | BibTeX | Tags: Amyloid-beta, bioenergy, cell signaling, cholinesterase inhibitor, glycolysis, phagocytosis, tricarboxylic cycle, ω-3 fatty acids.

Neal, Adam S.; Nunez, Miguel; Lai, Tiffany; Tosevska, Anela; Morselli, Marco; Amneus, Malaika; Zakhour, Mae; Moatamed, Neda A.; Pellegrini, Matteo; Memarzadeh, Sanaz

Expression of Stromal Progesterone Receptor and Differential Methylation Patterns in the Endometrium May Correlate with Response to Progesterone Therapy in Endometrial Complex Atypical Hyperplasia. Journal Article

In: Reproductive Sciences, 2020.

Abstract | Links | BibTeX | Tags: Biomarker, Endometrial hyperplasia, Hormonal therapy, Progesterone receptor, Progesterone therapy

Brito, Jaqueline J; Mosqueiro, Thiago; Rotman, Jeremy; Xue, Victor; Chapski, Douglas J; la Hoz, Juan De; Matias, Paulo; Martin, Lana S; Zelikovsky, Alex; Pellegrini, Matteo; Mangul, Serghei

Telescope: an interactive tool for managing large-scale analysis from mobile devices Journal Article

In: GigaScience, 9 (1), 2020.

Abstract | Links | BibTeX | Tags: DAG, directed acyclic graph, Graphical User Interface, GUI, Research Computing, Secure Shell, SGE, Sun Grid Engine, telescopes, VDI

2019

Lozano‐Huntelman, Natalie Ann; Singh, Nina; Valencia, Alondra; Mira, Portia; Sakayan, Maral; Boucher, Ian; Tang, Sharon; Brennan, Kelley; Gianvecchio, Crystal; Fitz‐Gibbon, Sorel; Yeh, Pamela

Evolution of Antibiotic Cross‐resistance and Collateral Sensitivity in Staphylococcus Epidermidis Using the Mutant Prevention Concentration and the Mutant Selection Window Journal Article

In: Evolutionary Applications, 2019.

Abstract | Links | BibTeX | Tags: antibiotic resistance, antimicrobial, bacterial evolution, correlated traits, susceptible

Galmozzi, Andrea; Kok, Bernard P.; Kim, Arthur S.; Montenegro-Burke, J. Rafael; Lee, Jae Y.; Spreafico, Roberto; Mosure, Sarah; Albert, Verena; Cintron-Colon, Rigo; Godio, Cristina; Webb, William R.; Conti, Bruno; Solt, Laura A.; Kojetin, Douglas; Parker, Christopher G.; Peluso, John J.; Pru, James K.; Siuzdak, Gary; Cravatt, Benjamin F.; Saez, Enrique

PGRMC2 is an intracellular haem chaperone critical for adipocyte function Journal Article

In: 2019.

Abstract | Links | BibTeX | Tags: adipocytes, cytotoxic, gene, haem, haemoproteins, intracellular, molecules, proteins, signalling, thermogenesis

Kurmangaliyev, Yerbol Z; Yoo, Juyoun; LoCascio, Samuel A; Zipursky, S Lawrence

Modular transcriptional programs separately define axon and dendrite connectivity. Journal Article

In: eLife, 2019.

Abstract | Links | BibTeX | Tags: D. melanogaster; genetics; genomics; neuronal connectivity; neuroscience; single-cell sequencing; transcriptional programs

Bulterys, P. L.; Toesca, I. J.; Norris, M. H.; Maloy, J. P.; Fitz-Gibbon, S. T.; France, B.; Toffig, B.; Morselli, M.; Somprasong, N.; Pellegrini, M.; Schweizer, H. P.; Tuanyok, A; Damoiseaux, R; French, C. T.; Miller, J. F.

An in situ high-throughput screen identifies inhibitors of intracellular Burkholderia pseudomallei with therapeutic efficacy. Journal Article

In: Proc Natl Acad Sci U S A. , 2019.

Abstract | Links | BibTeX | Tags: Burkholderia pseudomallei; drug discovery; melioidosis; small molecule; type 6 secretion system

Romero, Zulema; Lomova, Anastasia; Said, Suzanne; Miggelbrink, Alexandra; Kuo, Caroline Y.; Campo-Fernandez, Beatriz; D.Hoban, Megan; E.Masiuk, Katelyn; N.Clark, Danielle; Long, Joseph; M.Sanchez, Julie; MiriamVelez,; Miyahira, Eric; Zhang, Ruixue; Brown, Devin; Wang, Xiaoyan; Z.Kurmangaliyev, Yerbol; P.Hollis, Roger; B.Kohn., Donald

Editing the Sickle Cell Disease Mutation in Human Hematopoietic Stem Cells: Comparison of Endonucleases and Homologous Donor Templates. Journal Article

In: Molecular Therapy, 27 (8), pp. 1389-1406, 2019.

Abstract | Links | BibTeX | Tags: CRISPR/Cas9; adeno-associated virus 6; gene editing; hematopoietic stem cells; homologous recombination; non-homologous end joining; sickle cell disease; zinc finger nuclease

Cantarella, S.; Carnevali, D.; Morselli, M.; Conti, A.; Pellegrini, M.; Montanini, B.; Dieci, G.

Alu RNA Modulates the Expression of Cell Cycle Genes in Human Fibroblasts. Journal Article

In: Int J Mol Sci. , 20 (13), 2019.

Abstract | Links | BibTeX | Tags: Alu retrotransposons; cell cycle; non-coding RNA

Leung CS,; Douglass SM,; Morselli M,; Obusan MB,; Pavlyukov MS,; Pellegrini M,; TL., Johnson

H3K36 Methylation and the Chromodomain Protein Eaf3 Are Required for Proper Cotranscriptional Spliceosome Assembly. Journal Article

In: Cell Rep. , 27 (13), pp. 3760-3769, 2019.

Abstract | Links | BibTeX | Tags: Eaf3; H3K36; Set2; chromatin; cotranscriptional splicing; methylation

2018

Sammy Pontrelli,; and Shao Thing Teoh Riley C. B. Fricke,; Walter A. Laviña,; Sastia Prama Putri,; Sorel Fitz-Gibbon,; Matthew Chung,; Matteo Pellegrini,; Eiichiro Fukusaki,; Liao, James C.

Metabolic repair through emergence of new pathways in Escherichia coli Journal Article

In: Nature Chemical Biology, 14 (11), pp. 1005–1009, 2018.

Abstract | Links | BibTeX | Tags: e.coli, metabolic repair

Eagleman, Sarah L.; Vaughn, Don A.; Drover, David R.; Drover, Caitlin M.; Cohen, Mark S.; Ouellette, Nicholas T.; MacIver., M. Bruce

Do Complexity Measures of Frontal EEG Distinguish Loss of Consciousness in Geriatric Patients Under Anesthesia? Journal Article

In: Frontiers in neuroscience, 12 , pp. 645, 2018.

Abstract | Links | BibTeX | Tags: anesthesia, electroencephalogram, entropy, geriatric, multiscale

Sammy Pontrelli,; Riley C. B. Fricke,; Memon, Sana Subhan; Sakurai, Sastia; Prama Putri,; Sorel Fitz-Gibbon,; Matthew Chung,; Hsin-Yi Wu,

Directed strain evolution restructures metabolism for 1-butanol production in minimal media Journal Article

In: Metabolic Engineering, 49 , pp. 153-163, 2018.

Abstract | Links | BibTeX | Tags: butanol, metabolomics, proteomics

Camacho, J; Truong, L; Kurt, Z; Chen, YW; Morselli, M; Gutierrez, G; Pellegrini, M; Yang, X; Allard, P.

The Memory of Environmental Chemical Exposure in C. elegans Is Dependent on the Jumonji Demethylases jmjd-2 and jmjd-3/utx-1. Journal Article

In: Cell Rep., 23 (8), pp. 2392-2404, 2018.

Abstract | Links | BibTeX | Tags: Bisphenol A; C. elegans; epigenetic; histone demethylase; reproductive function; transgenerational inheritance

Sarin, Sumeet; Zuniga-Sanchez, Elizabeth; Z.Kurmangaliyev, Yerbol; Cousins, Henry; Patel, Mili; Hernandez, Jeanette; X.Zhang, Kelvin; A.Samuel, Melanie; Morey, Marta; R.Sanes, Joshua; Zipursky, Lawrence

Role for Wnt Signaling in Retinal Neuropil Development: Analysis via RNA-Seq and In Vivo Somatic CRISPR Mutagenesis Journal Article

In: Neuron, 98 (1), pp. 109-126, 2018.

Abstract | Links | BibTeX | Tags: Fzd4; Fzd5; OPL; Ryk; Wnt5; bipolars; neuron; photoreceptors; retina; synapse

S, Ziyad; JD, Riordan; AM, Cavanaugh; T, Su; GE, Hernandez; G, Hilfenhaus; M, Morselli; K, Huynh; K, Wang; JN, Chen; AJ, Dupuy; ML., Iruela-Arispe

A Forward Genetic Screen Targeting the Endothelium Reveals a Regulatory Role for the Lipid Kinase Pi4ka in Myelo- and Erythropoiesis. Journal Article

In: Cell Rep. , 22 (5), pp. 1211-1224, 2018.

Abstract | Links | BibTeX | Tags: Akt; Erk; PI4KAP2; Pi4ka; erythropoiesis; hematopoiesis; hemogenic endothelium; leukemia; lipid kinase; myelopoiesis

Thorsson, Vésteinn; Gibbs, David L; Brown, Scott D; Wolf, Denise; Bortone, Dante S; Yang, Tai-Hsien Ou; Porta-Pardo, Eduard; Gao, Galen F; Plaisier, Christopher L; Eddy, James A; others,

The immune landscape of cancer Journal Article

In: Immunity, 48 (4), pp. 812–830, 2018.

Links | BibTeX | Tags:

Ricketts, Christopher J; Cubas, Aguirre A De; Fan, Huihui; Smith, Christof C; Lang, Martin; Reznik, Ed; Bowlby, Reanne; Gibb, Ewan A; Akbani, Rehan; Beroukhim, Rameen; others,

The Cancer Genome Atlas Comprehensive Molecular Characterization of Renal Cell Carcinoma Journal Article

In: Cell reports, 23 (1), pp. 313–326, 2018.

Links | BibTeX | Tags:

Listgarten, Jennifer; Weinstein, Michael M; Kleinstiver, Benjamin P; Sousa, Alexander A; Joung, Keith J; Crawford, Jake; Gao, Kevin; Hoang, Luong; Elibol, Melih; Doench, John G; others,

Prediction of off-target activities for the end-to-end design of CRISPR guide RNAs Journal Article

In: Nature Biomedical Engineering, 2 (1), pp. 38, 2018.

Links | BibTeX | Tags: CRISPR

Shi, Baochen; Leung, Donald YM; Taylor, Patricia A; Li, Huiying

Methicillin-Resistant Staphylococcus aureus Colonization Is Associated with Decreased Skin Commensal Bacteria in Atopic Dermatitis. Journal Article

In: The Journal of investigative dermatology, 2018.

Links | BibTeX | Tags: bacteria

Fraser, Devaughn; Mouton, Alice; Serieys, Laurel EK; Cole, Steve; Carver, Scott; Vandewoude, Sue; Lappin, Michael; Riley, Seth PD; Wayne, Robert

Genome-wide expression reveals multiple systemic effects associated with detection of anticoagulant poisons in bobcats (Lynx rufus) Journal Article

In: Molecular ecology, 27 (5), pp. 1170–1187, 2018.

Links | BibTeX | Tags: GWAS

Ziyad, Safiyyah; Riordan, Jesse D; Cavanaugh, Ann M; Su, Trent; Hernandez, Gloria E; Hilfenhaus, Georg; Morselli, Marco; Huynh, Kristine; Wang, Kevin; Chen, Jau-Nian; others,

A Forward Genetic Screen Targeting the Endothelium Reveals a Regulatory Role for the Lipid Kinase Pi4ka in Myelo-and Erythropoiesis Journal Article

In: Cell reports, 22 (5), pp. 1211–1224, 2018.

Links | BibTeX | Tags: cancer, gene mutation, leukemia, RNA-seq

Ko, Albert; Venkatesan, Natarajan; Chatoff, Jenna; Morselli, Marco; Fishbein, Gregory; Bomont, Pascale; Pellegrini, Matteo; Wang, Marilene; Srivatsan, Eri

GAN gene exon 8 SNP is related to gigaxonin expression and increased expression of e-cadherin in head and neck cancer Miscellaneous

2018.

Links | BibTeX | Tags:

Khalid, Aysha B; Slayden, Alexandria V; Kumpati, Jerusha; Perry, Chanel D; Berryhill, Stuart B; Crawford, Julie A; Fatima, Iram; Morselli, Marco; Pellegrini, Matteo; Miranda-Carboni, Gustavo A; others,

GATA4 represses RANKL via multiple long-range enhancers to regulate osteoclast differentiation Journal Article

In: Bone, 2018.

Links | BibTeX | Tags:

Borgognone, Alessandra; Castanera, Raul; Morselli, Marco; López-Varas, Leticia; Rubbi, Liudmilla; Pisabarro, Antonio G; Pellegrini, Matteo; Ramirez, Lucia

Transposon-associated epigenetic silencing during Pleurotus ostreatus life cycle Journal Article

In: DNA Research, 2018.

Links | BibTeX | Tags:

Mitchell, Simon; Roy, Koushik; Zangle, Thomas A; Hoffmann, Alexander

Nongenetic origins of cell-to-cell variability in B lymphocyte proliferation Journal Article

In: Proceedings of the National Academy of Sciences, 115 (12), pp. E2888–E2897, 2018.

Links | BibTeX | Tags:

Roy, Koushik; Shokhirev, Maxim Nikolaievich; Mitchell, Simon; Hoffmann, Alexander

Deriving Quantitative Cell Biological Information from Dye-Dilution Lymphocyte Proliferation Experiments Incollection

In: B Cell Receptor Signaling, pp. 81–94, Springer, 2018.

Links | BibTeX | Tags:

Gangalum, Rajendra K; Kim, Dongjae; Kashyap, Raj K; Mangul, Serghei; Zhou, Xinkai; Elashoff, David; Bhat, Suraj

Spatial Analysis of Single Fiber Cells of the Developing Ocular Lens Reveals Regulated Heterogeneity of Gene Expression Journal Article

In: Available at SSRN 3205412, 2018.

Links | BibTeX | Tags:

Mangul, Serghei; Martin, Lana S; Eskin, Eleazar

Involving undergraduates in genomics research to narrow the education--research gap Journal Article

In: Nature biotechnology, 36 (4), pp. 369, 2018.

Links | BibTeX | Tags: education, training

Lay, Fides D; Kelly, Theresa K; Jones, Peter A

Nucleosome Occupancy and Methylome Sequencing (NOMe-seq) Incollection

In: DNA Methylation Protocols, pp. 267–284, Springer, 2018.

Links | BibTeX | Tags:

Miao, Jianwei; Pryor, Alan; Yang, Yongsoo; Rana, Arjun; Gallagher-Jones, Marcus; Zhou, Jihan; Lo, Yuan Hung; Rodriguez, Jose A; Chiu, Wah

GENFIRE: from Precisely Localizing Single Atoms in Materials to High Resolution 3D Imaging of Cellular Structures Journal Article

In: Microscopy and Microanalysis, 24 (S1), pp. 1446–1447, 2018.

Links | BibTeX | Tags:

Pryor, Alan; Rana, Arjun; Xu, Rui; Rodriguez, Jose A; Yang, Yongsoo; Gallagher-Jones, Marcus; Jiang, Huaidong; Kanhaiya, Krishan; Nathanson, Michael; Park, Jae Hyun; others,

Single-shot 3D coherent diffractive imaging of core-shell nanoparticles with elemental specificity Journal Article

In: Scientific reports, 8 (1), pp. 8284, 2018.

Links | BibTeX | Tags:

Lo, Yuan Hung; Zhao, Lingrong; Gallagher-Jones, Marcus; Rana, Arjun; Lodico, Jared; Xiao, Weikun; Regan, BC; Miao, Jianwei

In situ coherent diffractive imaging Journal Article

In: Nature communications, 9 (1), pp. 1826, 2018.

Links | BibTeX | Tags:

Park, Shuin; Ranjbarvazirj, Sara; Lay, Fides D; Zhao, Peng; Miller, Mark J; Dhaliwal, Jasmeet S; Huertas-Vazquez, Adriana; Wu, Xiuju; Qiao, Rong; Soffer, Justin M; others,

Genetic Regulation of Fibroblast Activation and Proliferation in Cardiac Fibrosis Journal Article

In: Circulation, pp. CIRCULATIONAHA–118, 2018.

Links | BibTeX | Tags:

Cheng, Lucy; Marinelli, Laura J; Grosset, Noel; Fitz-Gibbon, Sorel T; Bowman, Charles A; Dang, Brian Q; Russell, Daniel A; Jacobs-Sera, Deborah; Shi, Baochen; Pellegrini, Matteo; others,

Complete genomic sequences of Propionibacterium freudenreichii phages from Swiss cheese reveal greater diversity than Cutibacterium (formerly Propionibacterium) acnes phages Journal Article

In: BMC microbiology, 18 (1), pp. 19, 2018.

Links | BibTeX | Tags: bacteria

Vaughn, Don A; van Deen, Welmoed K; Kerr, Wesley T; Meyer, Travis R; Bertozzi, Andrea L; Hommes, Daniel W; Cohen, Mark Steven

Using insurance claims to predict and improve hospitalizations and biologics use in members with inflammatory bowel diseases Journal Article

In: Journal of biomedical informatics, 81 , pp. 93–101, 2018.

Links | BibTeX | Tags:

147 entries « 1 of 3 »