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W15: Bacterial Genomics

October 26 @ 1:30 pm - October 28 @ 4:30 pm

The workshop will mainly focus on teaching the fundamentals of bacterial genomics and basic bioinformatics analysis. As a sample data Vibrio cholerae genome will be used as the practice dataset, and workshop participants will try to reproduce the expected results. The workshop will start with detailed instructions on how to quality control the raw sequence data and the assemble of a genome. Next, basic statistics will be explained to learn how to check the quality of assembledgenome (e.g., N50, # of contigs, # of core genes). On the genome analysis, average nucleotide identity (ANI) will be performed to identify the genome into known species followed by a prediction of open reading frames (ORFs), protein annotation, and comparing the results with other genomes.

Details

Start:
October 26 @ 1:30 pm
End:
October 28 @ 4:30 pm
Event Categories:
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Event Tags:
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Website:
https://qcb.ucla.edu/collaboratory/workshops/w15-bacterial-genomics/

Organizer

QCB Collaboratory
Phone:
310-825-2917
Email:
collaboratory@ucla.edu
Website:
https://qcb.ucla.edu/collaboratory/schedule-of-workshops/

Venue

529 Boyer Hall
611 Charles E Young Dr E,
Los Angeles, CA 90095 United States
+ Google Map
Phone:
3108252917

Details

Start:
October 26 @ 1:30 pm
End:
October 28 @ 4:30 pm
Event Categories:
,
Event Tags:
, , , , , ,
Website:
https://qcb.ucla.edu/collaboratory/workshops/w15-bacterial-genomics/

Organizer

QCB Collaboratory
Phone:
310-825-2917
Email:
collaboratory@ucla.edu
Website:
https://qcb.ucla.edu/collaboratory/schedule-of-workshops/

Venue

529 Boyer Hall
611 Charles E Young Dr E,
Los Angeles, CA 90095 United States
+ Google Map
Phone:
3108252917