W9: Intro to Python
This workshop will cover the basic concepts of Python programming. The course is supplemented with many hands-on exercises with emphasis given towards computational biology use cases.
Calendar of Events
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Calendar of Events
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W1: Intro to Unix command line
Unix is a command-line-based platform that is a highly powerful and flexible tool for data management and analysis. First, this workshop introduces the basic concepts of UNIX operating system and […]
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W2: Using NGS Analysis Tools
High-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First, this workshop introduces the more “universal” aspects of high-throughput sequence […]
W18: Advanced Python
This workshop will cover some more advanced topics in python including an overview of object-oriented python (this will not be an in-depth course on object-oriented programming), use of the numpy […]
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W17: Machine Learning with Python
This workshop will cover the basic principles involved in the applications mentioned above, such as pattern recognition, linear and non-linear regression and cluster analysis. The workshop will be oriented towards […]
W21: Image Processing for Microscopy
The analysis of imaging datasets is both exciting and challenging. New and increasingly powerful techniques try to maximize the information derived from multi-dimensional imaging datasets. Yet, every dataset can be […]
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Frontiers in Computational Biosciences Seminar Series: Seth Bordenstein, PhD, Director, One Health Microbiome Center, Huck Endowed Chair in Microbiome Sciences, The Pennsylvania State University
Frontiers in Computational Biosciences Seminar Series: Seth Bordenstein, PhD, Director, One Health Microbiome Center, Huck Endowed Chair in Microbiome Sciences, The Pennsylvania State University
TITLE: "human microbiome variation across ethnicity and race” Hosted by Nandita Garud for Genetics & Genomics
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W3: Intro to R and Data Visualization
R (www.r-project.org) is a free software environment for statistical computing and graphics. First, this workshop introduces basic concepts, syntax, and usage in R programming, statistical analysis, and visualization techniques. We […]
W16: Library Prep for NGS
This workshop will cover the basis of Next-Gen Sequencing Library Preparation for Illumina Sequencers. Different Library Preparation Techniques (DNA-seq, ChIP-seq, RNA-seq, Methyl-seq) are explained the first and second day in […]
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Frontiers in Computational Biosciences Seminar Series: Stefen Canzar, PhD, Associate Professor of Computer Science and Engineering, Pennsylvania State University
Frontiers in Computational Biosciences Seminar Series: Stefen Canzar, PhD, Associate Professor of Computer Science and Engineering, Pennsylvania State University
TITLE: "Algorithms or experiments? How to improve transcriptome analysis” Hosted Jingyi Jessica Li for Bioinformatics
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W12: Intro to MATLAB
MATLAB is a powerful, high-level programing language for numerical computation, visualization, and application development. This workshop will start by introducing the MATLAB environment and then cover working with arrays and […]
W31: Spatial Transcriptomics
Spatial transcriptomics is an emerging field that bridges molecular biology and anatomy. Over the last decade, a battery of assays have been developed that profile gene expression in-situ, i.e, measuring […]
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Research-in-Progress (RIP) Seminar: Amantha O’Keeffe (Park), Graduate Student in Chemical and Biomolecular Engineering
Research-in-Progress (RIP) Seminar: Amantha O’Keeffe (Park), Graduate Student in Chemical and Biomolecular Engineering
TITLE: "Quantification of Absolute Metabolite Concentrations in T cells by Shotgun Metabolomics." ABSTRACT: Quantitative understanding of immunometabolism underlies improving immune functions and developing successful immunotherapies. Kinetic and thermodynamic laws rely on […]
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Research-in-Progress (RIP) Seminar: Alexis Weber (de la Torre-Ubieta and Geschwind), Graduate Student in Human Genetics
Research-in-Progress (RIP) Seminar: Alexis Weber (de la Torre-Ubieta and Geschwind), Graduate Student in Human Genetics
TITLE: "Defining molecular dysregulation in Down Syndrome neocortex and neural progenitor cells." ABSTRACT: Down syndrome (DS) is the most common form of genetic, intellectual disability, which occurs 1 in 700 […]