Workshop Description (Intermediate Course)
This workshop provides an introduction to the microbiome analyses from the raw sequence data generated from the next-generation sequencing platforms. We will cover how to perform the 16S rRNA-based analysis using an open-source bioinformatics pipeline QIIME. We will also cover some downstream analyses of the microbiome data beyond QIIME, including statistical analyses and functional analyses.
Workshop Materials
Day 1
We will demonstrate the 16S rRNA gene analysis using QIIME
- Run QIIME on Hoffman2 or local
- Sequence data preparation
- Operational Taxonomic Units (OTU) picking, Taxonomic assignment & inferring phylogeny
Day 1 slides can be found here- Day 1.
Day 2
We will demonstrate the 16S rRNA gene analysis using QIIME
- Microbiome diversity analyses
Day 2 slides can be found here- Day 2
Day 3
On day 3 we will learn functional analyses of the microbiome
Day 3 slides can be found her- Day 3
Technical Requirements
- Attendees are required to have a Hoffman2 account. To apply for an account, click here. UCLA participants who lack a faculty sponsor and non-UCLA participants may apply for a temporary Hoffman2 account, requesting sponsorship from Collaboratory Workshops.
Instructor
Michael Weinstein, Ph.D.
Videos
Reviews
I’m glad that you actually have to change some file names from the slides so people actually try to understand what the slides mean– that they are examples but you can’t just mindlessly copy and paste.
I also liked how Shin addressed things related to publications and really developed students questions.
Workshop Details
Prerequisites: None
Length: 3 days, 3 hrs per day
Level: Intermediate
Location: ZOOM
Seats Available: TBD
Winter 2021 Dates
February 16, 17, and 18
9:00 AM to 12:00 PM
REGISTRATION IS OPEN!