Unix is a command-line-based platform that is a highly powerful and flexible tool for data management and analysis. First, this workshop introduces the basic concepts of UNIX operating system and shell scripting. We will explore essential hands-on skills to confidently use the command line interface on either a local (laptop) or a remote (hoffman2 cluster) computer running the Unix system. Next, this workshop covers how to navigate around the Unix file system from the command line and use a number of basic, common Unix commands. The course is supplemented with many hands-on examples. No prior knowledge of Unix or programming is required.
- Learning the fundamentals of Unix
- Understand the underlying philosophy of Unix and command line interface
- Login and log out of a Hoffman2 Cluster (Unix file system)
- Navigate through the Unix file system
- Create and modify files using Unix editor
- Copy, rename, delete files
Slides: Day 1
- Use the productivity features of the Unix shell
- Display files
- Use tools for processing text files
- Search plain-text data sets for lines matching a regular expression using grep
- Edit files in non-interactive mode using sed
Slides: Day 2
- Process tab delimited files using awk
- Write simple shell scripts
- Submit jobs via qsub on hoffman2
Slides: Day 3
- Attendees are required to have a Hoffman2 account. To apply for an account, click here. UCLA participants who lack a faculty sponsor and non-UCLA participants may apply for a temporary Hoffman2 account, requesting sponsorship from Collaboratory Workshops.
Diane Lefaudeux is currently an assistant specialist in signaling systems lab with Professor Alexander Hoffmann. She obtained a double engineering degree in 2013 from École Centrale Paris in France and Universität Stuttgart in Germany. Diane’s research focus on understanding and modeling RNA expression. Her main expertise is in computational biology, mathematical modeling and transnational research.
It was great! I have learned a lot!
This has been a great experience, it was very easy to follow and the instructor was phenomenal! I learned a lot and I feel much more comfortable opening a terminal and learning how to work with it now.
Length: 3 days, 3 hrs per day
Seats Available: TBD
Mar. 30, 31 and Apr. 1
9:00 AM to 12:00 PM
REGISTRATION IS CLOSED!