A stimulus-contingent positive feedback loop enables IFN-β dose-dependent activation of pro-inflammatory genes

Quantifying stimulus-response specificity to probe the functional state of macrophages

Kinetics of mRNA nuclear export regulate innate immune response gene expression

Systematic evaluation of methylation-based cell type deconvolution methods for plasma cell-free DNA

scCDC: a computational method for gene-specific contamination detection and correction in single-cell and single-nucleus RNA-seq data

APIR: Aggregating Universal Proteomics Database Search Algorithms for Peptide Identification with FDR Control

Dissecting gene expression heterogeneity: generalized Pearson correlation squares and the K-lines clustering algorithm

Statistical method scDEED for detecting dubious 2D single-cell embeddings and optimizing t-SNE and UMAP hyperparameters

iSubGen generates integrative disease subtypes by pairwise similarity assessment

Crowd-sourced benchmarking of single-sample tumor subclonal reconstruction