Our Collaboratory Fellows have published papers on a variety of research topics, stemming from both their home labs and Collaboratory-supported collaborations across campus.

Find us on Google Scholar: https://scholar.google.com/citations?user=XN6DdggAAAAJ&hl=en

116 entries « 3 of 3 »

2016

Flinders, Colin; Lam, Larry; Rubbi, Liudmilla; Ferrari, Roberto; Fitz-Gibbon, Sorel T; Chen, Pao-Yang; Thompson, Michael J; Christofk, Heather; Agus, David; Ruderman, Daniel; others,

Epigenetic changes mediated by polycomb repressive complex 2 and E2a are associated with drug resistance in a mouse model of lymphoma Journal Article

Genome medicine, 8 (1), pp. 54, 2016.

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Blaby-Haas, Crysten E; Castruita, Madeli; Fitz-Gibbon, Sorel T; Kropat, Janette; Merchant, Sabeeha S

Ni induces the CRR1-dependent regulon revealing overlap and distinction between hypoxia and Cu deficiency responses in Chlamydomonas reinhardtii Journal Article

Metallomics, 8 (7), pp. 679–691, 2016.

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Sork, Victoria L; Fitz-Gibbon, Sorel T; Puiu, Daniela; Crepeau, Marc; Gugger, Paul F; Sherman, Rachel; Stevens, Kristian; Langley, Charles H; Pellegrini, Matteo; Salzberg, Steven L

First draft assembly and annotation of the genome of a California endemic oak Quercus lobata Née (Fagaceae) Journal Article

G3: Genes, Genomes, Genetics, pp. g3–116, 2016.

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Gugger, Paul F; Fitz-Gibbon, Sorel T; PellEgrini, Matteo; Sork, Victoria L

Species-wide patterns of DNA methylation variation in Quercus lobata and their association with climate gradients Journal Article

Molecular ecology, 25 (8), pp. 1665–1680, 2016.

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Li, Xiaobo; Zhang, Ru; Patena, Weronika; Gang, Spencer S; Blum, Sean R; Ivanova, Nina; Yue, Rebecca; Robertson, Jacob M; Lefebvre, Pete; Fitz-Gibbon, Sorel T; others,

An indexed, mapped mutant library enables reverse genetics studies of biological processes in Chlamydomonas reinhardtii Journal Article

The Plant Cell, pp. TPC2015–00465, 2016.

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Levine, Jaclynn; Kwon, Eunice; Paez, Pablo; Yan, Weihong; Czerwieniec, Gregg; Loo, Joseph A; Sofroniew, Michael V; Wanner, Ina-Beate

Traumatically injured astrocytes release a proteomic signature modulated by STAT 3-dependent cell survival Journal Article

Glia, 64 (5), pp. 668–694, 2016.

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Palanichamy, Jayanth Kumar; Tran, Tiffany M; Howard, Jonathan M; Contreras, Jorge R; Fernando, Thilini R; Sterne-Weiler, Timothy; Katzman, Sol; Toloue, Masoud; Yan, Weihong; Basso, Giuseppe; others,

RNA-binding protein IGF2BP3 targeting of oncogenic transcripts promotes hematopoietic progenitor proliferation Journal Article

The Journal of clinical investigation, 126 (4), pp. 1495–1511, 2016.

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2015

Clark, Rebecca I; Salazar, Anna; Yamada, Ryuichi; Fitz-Gibbon, Sorel T; Morselli, Marco; Alcaraz, Jeanette; Rana, Anil; Rera, Michael; Pellegrini, Matteo; William, Ja W; others,

Distinct shifts in microbiota composition during Drosophila aging impair intestinal function and drive mortality Journal Article

Cell reports, 12 (10), pp. 1656–1667, 2015.

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Spreafico, Roberto; Mitchell, Simon; Hoffmann, Alexander

Training the 21st century immunologist Journal Article

Trends in immunology, 36 (5), pp. 283–285, 2015.

Links | BibTeX | Tags: education, training

House, Christopher H; Pellegrini, Matteo; Fitz-Gibbon, Sorel T

Genome-wide gene order distances support clustering the gram-positive bacteria Journal Article

Frontiers in microbiology, 5 , pp. 785, 2015.

Links | BibTeX | Tags: bacteria, GWAS

Blaby, Ian K; Blaby-Haas, Crysten E; Pérez-Pérez, Maria Esther; Schmollinger, Stefan; Fitz-Gibbon, Sorel T; Lemaire, Stéphane D; Merchant, Sabeeha S

Genome-wide analysis on Chlamydomonas reinhardtii reveals the impact of hydrogen peroxide on protein stress responses and overlap with other stress transcriptomes Journal Article

The Plant Journal, 84 (5), pp. 974–988, 2015.

Links | BibTeX | Tags: GWAS

Lopez, David Adrian; Hamaji, Takashi; Kropat, Janette; Hoff, Peter De; Morselli, Marco; Rubbi, Liudmilla; Fitz-Gibbon, Sorel T; Gallaher, Sean D; Merchant, Sabeeha S; Umen, James G; others,

Dynamic changes in the transcriptome and methylome of Chlamydomonas reinhardtii throughout its life cycle Journal Article

Plant physiology, pp. pp–00861, 2015.

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Gallaher, Sean D; Fitz-Gibbon, Sorel T; Glaesener, Anne G; Pellegrini, Matteo; Merchant, Sabeeha S

Chlamydomonas genome resource for laboratory strains reveals a mosaic of sequence variation, identifies true strain histories, and enables strain-specific studies Journal Article

The Plant Cell, pp. tpc–15, 2015.

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Fernando, Thilini R; Rodriguez-Malave, Norma I; Waters, Ella V; Yan, Weihong; Casero, David; Basso, Giuseppe; Pigazzi, Martina; Rao, Dinesh S

LncRNA expression discriminates karyotype and predicts survival in B-lymphoblastic leukemia Journal Article

Molecular cancer research, pp. molcanres–0006, 2015.

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2014

Adeyo, Oludotun; Allan, Bernard B; II, Richard Barnes H; Goulbourne, Chris N; Tatar, Angelica; Tu, Yiping; Young, Lorraine C; Weinstein, Michael M; Tontonoz, Peter; Fong, Loren G; others,

Palmoplantar keratoderma along with neuromuscular and metabolic phenotypes in Slurp1-deficient mice Journal Article

Journal of Investigative Dermatology, 134 (6), pp. 1589–1598, 2014.

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Weinstein, Michael M; Tompson, Stuart W; Chen, Yuqing; Lee, Brendan; Cohn, Daniel H

Mice expressing mutant Trpv4 recapitulate the human TRPV4 disorders Journal Article

Journal of Bone and Mineral Research, 29 (8), pp. 1815–1822, 2014.

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116 entries « 3 of 3 »