Found 68 Results
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DNA methylation predicts infection risk in kidney transplant recipients


Fei‑Man Hsu, Harry C. Pickering, Liudmilla Rubbi, Michael Thompson, Elaine F Reed, Matteo Pellegrini, and Joanna M Schaenman. DNA methylation predicts infection risk in kidney transplant recipients. Life Science Alliance, […]

June 27, 2025


Molecular gradients shape synaptic specificity of a visuomotor transformation


Dombrovski, M., Zang, Y., Frighetto, G., Vaccari, A., Jang, H., Mirshahidi, P. S., Xie, F., Sanfilippo, P., Hina, B. W., Rehan, A., Hussein, R. H., Mirshahidi, P. S., Lee, C., […]

June 25, 2025


Placental Privilege: Evidence of organ resilience in severe COVID-19 in pregnancy.


Presicce P, Morselli M, Jeong A, Altendahl M, Martinez G, Del Vecchio G, Devaskar SU, Pellegrini M, Afshar Y, Kallapur SG. Placental Privilege: Evidence of organ resilience in severe COVID-19 in […]


A primer on single-cell RNA-seq analysis using dendritic cells as a case study


Protti, G. and Spreafico, R. (2025), A primer on single-cell RNA-seq analysis using dendritic cells as a case study. FEBS Lett. https://doi.org/10.1002/1873-3468.15009


Olfactory ensheathing cells from adult female rats are hybrid glia that promote neural repair


Patricia E Phelps, Sung Min Ha, Rana R Khankan, Mahlet A Mekonnen, Giovanni Juarez, Kaitlin L Ingraham Dixie, Yen-Wei Chen, Xia Yang (2025) Olfactory ensheathing cells from adult female rats […]

June 26, 2025


Complete genomes of Mucilaginibacter sabulilitoris SNA2 and Mucilaginibacter sp. cycad4: microbes with the potential for plant growth promotion


Hirsch AM, Humm E, Rubbi L, Del Vecchio G, Ha SM, Pellegrini M, Gunsalus RP.2025.Complete genomes of Mucilaginibacter sabulilitoris SNA2 and Mucilaginibacter sp. cycad4: microbes with the potential for plant […]


Gut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease


 Ha S, Lee K, Kim G, and Shim J. Gut Microbiota-Based Ensemble Model Predicts Prognosis Of Pediatric Inflammatory Bowel Disease. iScience. 27(12):111442. 2024 DOI: 10.1016/j.isci.2024.111442


Isolated from a Surface-Sterilized Fava Bean Nodule. Microbiology Resource Announcements.


Hirsch AM, Humm E, Rubbi L, Del Vecchio G, Ha SM, Pellegrini M, Gunsalus RP.2024.Complete genome of Variovorax sp. EBFNA2, isolated from a surface-sterilized fava bean nodule. Microbiol Resour Announc13:e00762-24.https://doi.org/10.1128/mra.00762-24


Gut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease


Ha SM, Lee K, Kim GH, Hurych J, Cinek O, Shim JO. Gut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease. iScience. 2024 Nov 22;27(12):111442. doi: 10.1016/j.isci.2024.111442. PMID: 39691780; […]


An epigenetic human cytomegalovirus infection score predicts viremia risk in seropositive lung transplant recipients


Fei‑Man Hsu, Rashmi P. Mohanty, Liudmilla Rubbi, Michael Thompson, Harry Pickering, Elaine F. Reed, John R. Greenland, Joanna M. Schaenman, and Matteo Pellegrini. An epigenetic human cytomegalovirus infection score predicts […]

June 27, 2025


Gut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease


Lee, K., Ha, S., and Shim, J. Case-control and multi-cohort analyses of gut microbiota in pediatric inflammatory bowel diseases: diagnostic and prognostic index for disease activity and remission.. iScience, Volume 27, […]

June 25, 2025


A genomic analysis reveals the diversity of cellulosome displaying bacteria


Minor CM, Takayesu A, Ha SM, Salwinski L, Sawaya MR, Pellegrini M, Clubb RT. A genomic analysis reveals the diversity of cellulosome displaying bacteria. Front Microbiol. 2024 Oct 30;15:1473396. doi: […]

June 26, 2025


DNA contamination within recombinant adeno-associated virus preparations correlates with decreased CD34+ cell clonogenic potential


Christopher R. Luthers, Sung-Min Ha, Annika Mittelhauser, Marco Morselli, Joseph D. Long, Caroline Y. Kuo, Zulema Romero, Donald B. Kohn, DNA contamination within recombinant adeno-associated virus preparations correlates with decreased […]


Genome of Dietzia cinnamea 55, a desert-isolated microbe with plant growth-promoting properties for grain crops


Hirsch AM, Khan N, Humm E, Rubbi M, Del Vecchio G, Ha SM, Pellegrini M, Gunsalus RP.2024.Genome of Dietzia cinnamea 55, a desert-isolated microbe with plant growth-promoting properties for grain […]


Spatial single-cell mapping of transcriptional differences across genetic backgrounds in mouse brains.


Hemminger, Z., Sanchez-Tam, G., Ocampo, H. D., Wang, A., Underwood, T., Xie, F., Zhao, Q., Song, D., Li, J. J., Dong, H., & Wollman, R. (2024). Spatial single-cell mapping of […]

June 25, 2025


Complete genomes of two Variovorax endophytes isolated from surface-sterilized alfalfa nodules


Hirsch AM, Humm E, Rubbi M, del Vecchio G, Ha SM, Pellegrini M, Gunsalus RP.2024.Complete genomes of two Variovorax endophytes isolated from surface-sterilized alfalfa nodules. Microbiol Resour Announc13:e00336-24.https://doi.org/10.1128/mra.00336-24

June 26, 2025


Temporally distinct 3D multi-omic dynamics in the developing human brain


Heffel, M. G., Zhou, J., Zhang, Y., Lee, D.-S., Hou, K., Pastor-Alonso, O., Abuhanna, K. D., Galasso, J., Kern, C., Tai, C.-Y., Garcia-Padilla, C., Nafisi, M., Zhou, Y., Schmitt, A. […]

June 25, 2025


Single cell multiomics systems biology for molecular toxicity


Graciel Diamante, Sung Min Ha, Darren Wijaya, Xia Yang, Single cell multiomics systems biology for molecular toxicity,Current Opinion in Toxicology, Volume 39, 2024, 100477, ISSN 2468-2020, https://doi.org/10.1016/j.cotox.2024.100477.

June 26, 2025


Relationships and Mendelian Randomization of Gut Microbe-Derived Metabolites with Metabolic Syndrome Traits in the METSIM Cohort


Mirzaei, S., DeVon, H. A., Cantor, R. M., Cupido, A. J., Pan, C., Ha, S. M., Fernandes Silva, L., Hilser, J. R., Hartiala, J., Allayee, H., Rey, F. E., Laakso, […]


Complete genomes of Mucilaginibacter sabulilitoris SNA2 and Mucilaginibacter sp. cycad4: microbes with the potential for plant growth promotion


Hirsch AM, Humm E, Rubbi L, Del Vecchio G, Ha SM, Pellegrini M, Gunsalus RP.2025.Complete genomes of Mucilaginibacter sabulilitoris SNA2 and Mucilaginibacter sp. cycad4: microbes with the potential for plant […]


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