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DNA methylation predicts infection risk in kidney transplant recipients
Fei‑Man Hsu, Harry C. Pickering, Liudmilla Rubbi, Michael Thompson, Elaine F Reed, Matteo Pellegrini, and Joanna M Schaenman. DNA methylation predicts infection risk in kidney transplant recipients. Life Science Alliance, […]
June 27, 2025
Epigenetic silencing of interleukin-10 by host-derived oxidized phospholipids supports a lethal inflammatory response to infections
Marco Di Gioia, Valentina Poli, Piao J. Tan, Roberto Spreafico, Anne Chu, Alex G. Cuenca, Zhongyang Wu, Mehdi Benamar, Laura Pandolfi, Federica Meloni, Fatemeh Askarian, Jason Hsiao, Elizaveata Borroum, Victor […]
July 23, 2025
Molecular gradients shape synaptic specificity of a visuomotor transformation
Dombrovski, M., Zang, Y., Frighetto, G., Vaccari, A., Jang, H., Mirshahidi, P. S., Xie, F., Sanfilippo, P., Hina, B. W., Rehan, A., Hussein, R. H., Mirshahidi, P. S., Lee, C., […]
June 25, 2025
Placental Privilege: Evidence of organ resilience in severe COVID-19 in pregnancy.
Presicce P, Morselli M, Jeong A, Altendahl M, Martinez G, Del Vecchio G, Devaskar SU, Pellegrini M, Afshar Y, Kallapur SG. Placental Privilege: Evidence of organ resilience in severe COVID-19 in […]
A primer on single-cell RNA-seq analysis using dendritic cells as a case study
Protti, G. and Spreafico, R. (2025), A primer on single-cell RNA-seq analysis using dendritic cells as a case study. FEBS Lett. https://doi.org/10.1002/1873-3468.15009
Olfactory ensheathing cells from adult female rats are hybrid glia that promote neural repair
Patricia E Phelps, Sung Min Ha, Rana R Khankan, Mahlet A Mekonnen, Giovanni Juarez, Kaitlin L Ingraham Dixie, Yen-Wei Chen, Xia Yang (2025) Olfactory ensheathing cells from adult female rats […]
June 26, 2025
Isolated from a Surface-Sterilized Fava Bean Nodule. Microbiology Resource Announcements.
Hirsch AM, Humm E, Rubbi L, Del Vecchio G, Ha SM, Pellegrini M, Gunsalus RP.2024.Complete genome of Variovorax sp. EBFNA2, isolated from a surface-sterilized fava bean nodule. Microbiol Resour Announc13:e00762-24.https://doi.org/10.1128/mra.00762-24
Gut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease
Ha SM, Lee K, Kim GH, Hurych J, Cinek O, Shim JO. Gut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease. iScience. 2024 Nov 22;27(12):111442. doi: 10.1016/j.isci.2024.111442. PMID: 39691780; […]
An epigenetic human cytomegalovirus infection score predicts viremia risk in seropositive lung transplant recipients
Fei‑Man Hsu, Rashmi P. Mohanty, Liudmilla Rubbi, Michael Thompson, Harry Pickering, Elaine F. Reed, John R. Greenland, Joanna M. Schaenman, and Matteo Pellegrini. An epigenetic human cytomegalovirus infection score predicts […]
June 27, 2025
Gut-microbiota-based ensemble model predicts prognosis of pediatric inflammatory bowel disease
Lee, K., Ha, S., and Shim, J. Case-control and multi-cohort analyses of gut microbiota in pediatric inflammatory bowel diseases: diagnostic and prognostic index for disease activity and remission.. iScience, Volume 27, […]
June 25, 2025
A genomic analysis reveals the diversity of cellulosome displaying bacteria
Minor CM, Takayesu A, Ha SM, Salwinski L, Sawaya MR, Pellegrini M, Clubb RT. A genomic analysis reveals the diversity of cellulosome displaying bacteria. Front Microbiol. 2024 Oct 30;15:1473396. doi: […]
June 26, 2025
DNA contamination within recombinant adeno-associated virus preparations correlates with decreased CD34+ cell clonogenic potential
Christopher R. Luthers, Sung-Min Ha, Annika Mittelhauser, Marco Morselli, Joseph D. Long, Caroline Y. Kuo, Zulema Romero, Donald B. Kohn, DNA contamination within recombinant adeno-associated virus preparations correlates with decreased […]
Genome of Dietzia cinnamea 55, a desert-isolated microbe with plant growth-promoting properties for grain crops
Hirsch AM, Khan N, Humm E, Rubbi M, Del Vecchio G, Ha SM, Pellegrini M, Gunsalus RP.2024.Genome of Dietzia cinnamea 55, a desert-isolated microbe with plant growth-promoting properties for grain […]
Spatial single-cell mapping of transcriptional differences across genetic backgrounds in mouse brains.
Hemminger, Z., Sanchez-Tam, G., Ocampo, H. D., Wang, A., Underwood, T., Xie, F., Zhao, Q., Song, D., Li, J. J., Dong, H., & Wollman, R. (2024). Spatial single-cell mapping of […]
June 25, 2025
Complete genomes of two Variovorax endophytes isolated from surface-sterilized alfalfa nodules
Hirsch AM, Humm E, Rubbi M, del Vecchio G, Ha SM, Pellegrini M, Gunsalus RP.2024.Complete genomes of two Variovorax endophytes isolated from surface-sterilized alfalfa nodules. Microbiol Resour Announc13:e00336-24.https://doi.org/10.1128/mra.00336-24
June 26, 2025
Temporally distinct 3D multi-omic dynamics in the developing human brain
Heffel, M. G., Zhou, J., Zhang, Y., Lee, D.-S., Hou, K., Pastor-Alonso, O., Abuhanna, K. D., Galasso, J., Kern, C., Tai, C.-Y., Garcia-Padilla, C., Nafisi, M., Zhou, Y., Schmitt, A. […]
June 25, 2025
Single cell multiomics systems biology for molecular toxicity
Graciel Diamante, Sung Min Ha, Darren Wijaya, Xia Yang, Single cell multiomics systems biology for molecular toxicity,Current Opinion in Toxicology, Volume 39, 2024, 100477, ISSN 2468-2020, https://doi.org/10.1016/j.cotox.2024.100477.
June 26, 2025
Relationships and Mendelian Randomization of Gut Microbe-Derived Metabolites with Metabolic Syndrome Traits in the METSIM Cohort
Mirzaei, S., DeVon, H. A., Cantor, R. M., Cupido, A. J., Pan, C., Ha, S. M., Fernandes Silva, L., Hilser, J. R., Hartiala, J., Allayee, H., Rey, F. E., Laakso, […]
Complete genomes of Mucilaginibacter sabulilitoris SNA2 and Mucilaginibacter sp. cycad4: microbes with the potential for plant growth promotion
Hirsch AM, Humm E, Rubbi L, Del Vecchio G, Ha SM, Pellegrini M, Gunsalus RP.2025.Complete genomes of Mucilaginibacter sabulilitoris SNA2 and Mucilaginibacter sp. cycad4: microbes with the potential for plant […]
Complete genome of Variovorax sp. EBFNA2, isolated from a surface-sterilized fava bean nodule
Hirscha A, Humm E, Rubbia M, Vecchioa G, Ha S, Pellegrini M, and Gunsalus R. Complete Genome of Variovorax sp. EBFNA2, Isolated from a Surface-Sterilized Fava Bean Nodule. Microbiology Resource Announcements. 13:e00762-24. 2024 DOI: 10.1128/mra.00762-24
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