Variant Discovery with GATK – Day One
The Collaboratory 610 Charles E Young Drive East - BOYER HALL ROOM 529, Los Angeles, CA, United StatesLearn to process raw data and call variants!
Free
Past Events
10 events found.
Sequencing
Variant Discovery with GATK – Day Two
The Collaboratory 610 Charles E Young Drive East - BOYER HALL ROOM 529, Los Angeles, CA, United StatesLearn to process raw data and call variants!
Free
Variant Discovery with GATK – Day Three
The Collaboratory 610 Charles E Young Drive East - BOYER HALL ROOM 529, Los Angeles, CA, United StatesLearn to process raw data and call variants!
Free
Galaxy for NGS Data Analysis – Day One
The Collaboratory 610 Charles E Young Drive East - BOYER HALL ROOM 529, Los Angeles, CA, United StatesLearn how to analyze NGS data using Galaxy!
Free
Galaxy for NGS Data Analysis – Day Two
The Collaboratory 610 Charles E Young Drive East - BOYER HALL ROOM 529, Los Angeles, CA, United StatesLearn how to analyze NGS data using Galaxy!
Free
W4: Galaxy for NGS Data Analysis
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesGalaxy (https://usegalaxy.org/) is a web-based infrastructure for bioinformatics application. First, this workshop introduces participants to using Galaxy for analysis of Next-Generation Sequencing data. Next, this workshop covers the structure of Galaxy, data format and manipulation, obtaining and sharing data, and building and sharing workflows. We will use the tools installed on the UCLA galaxy to […]
W7: ChIP-seq Analysis
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThis workshop aims to provide skills needed to address principles of the assay, quality assessment, sequencing depth, data processing and functional downstream analyses of ChIP-seq datasets. Students will have opportunities to practice hands-on with state-of-the-art analytical tools.
W11: Metagenomics Analysis with Python and R
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThis workshop provides an introduction to the microbiome analyses from the raw sequence data generated from the next-generation sequencing platforms. We will cover how to perform the 16S rRNA-based analysis using an open-source bioinformatics pipeline QIIME. We will also cover some downstream analyses of the microbiome data beyond QIIME, including statistical analyses and functional analyses.
W2: Using NGS Analysis Tools
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesHigh-throughput sequencing technology involves a number of concepts and techniques that shape a project before application-specific processes are utilized. First, this workshop introduces the more “universal” aspects of high-throughput sequence analysis—from experimental design to sequencing and alignment methods. Next, this workshop covers common file formats for sequence data and limitations of sequencing technologies. We will […]
W26: Protein Structure with AlphaFold
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThe goal of the workshop is to enable the participants to submit and rationally evaluate results of the AlphaFold protein structure predictions. The class will cover the basic principles of the structural biology of proteins, protein structure visualization (in pymol) and protein structure prediction. The participants will have opportunity to generate AlphaFold predictions for a […]
