Past Events
W6: BS-DNA Methylation Analysis with Hoffman2 and R
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThis workshop will introduce the basic principles of DNA methylation and briefly describe available methods for DNA methylation assessment, focusing on bisulfite sequencing (BS-Seq). We will cover the principles of BSseq preprocessing, alignment and methylation calling, differential methylation analysis, annotation and visualization. Attendees will have the opportunity to work on real DNA methylation data provided […]
W31: Spatial Transcriptomics
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesSpatial transcriptomics is an emerging field that bridges molecular biology and anatomy. Over the last decade, a battery of assays have been developed that profile gene expression in-situ, i.e, measuring the abundances of mRNA molecules in cells and tissues while retaining information about their spatial locations. This workshop will introduce the basic concepts, major techniques, […]
Frontiers in Computational Biosciences Seminar Series: Roy Wollman, PhD, Professor, Biochemistry, Structural and Computational Biology, Systems Biology and Biological Regulation – UCLA
Boyer Hall 159TITLE: "Spatial Single-Cell Mapping of Transcriptional Differences Across Genetic Backgrounds in Mouse Brains"
W1c: Intro to Unix command line III
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesFrontiers in Computational Biosciences Seminar Series: Carl Veller, PhD, Assistant Professor of Ecology & Evolution – University of Chicago
Boyer Hall 159TITLE: "Chromosome-scale drift under stabilizing selection, with evolutionary implications"
W36: Mergeomics for Multiomics Integration
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesMergeomics is a computational tool designed to elucidate the underlying pathways, networks, and key regulators of complex diseases by integrating multi-omics data (genomics, transcriptomics, epigenomics, proteomics, etc). With use of integrative omics concepts and network modeling methods, this tool can uncover disease-associated gene sets and biological pathways across omics layers and can identify key drivers […]
W5a: RNA-seq I Analysis
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesRNA-seq I aims to provide an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). The workshop can serve also as a starting point to develop a gene expression project. This workshop is divided in three days that will cover major steps of processing RNA-seq. To facilitate learning, the […]
W5b: RNA-Seq II Analysis
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesRNA-seq II aims to provide tools for analysis of gene expression data from read counts to biology using R. To facilitate learning, the workshop will use a real case study based approach appropriate for Illumina read data (same as RNA-seq I).
W24: Cancer Genomics
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesAs we step into the era of precision medicine, the need for extensive genomic data analysis is more pressing than ever. With the advent of high-throughput technologies, a plethora of genomic, transcriptomic, and epigenomic datasets from cancer patients have been sequenced, providing a wealth of data for systematic bioinformatics analysis. This workshop is tailored to […]