Single-nucleotide conservation state annotation of the SARS-CoV-2 genome

Learning a genome-wide score of human-mouse conservation at the functional genomics level

Stimulus-specific responses in innate immunity: Multilayered regulatory circuits

Quantifying information accumulation encoded in the dynamics of biochemical signaling

NF-κB dynamics determine the stimulus specificity of epigenomic reprogramming in macrophages

Six distinct NFκB signaling codons convey discrete information to distinguish stimuli and enable appropriate macrophage responses

mountainClimber Identifies Alternative Transcription Start and Polyadenylation Sites in RNA-Seq

Statistical inference of differential RNA-editing sites from RNA-sequencing data by hierarchical modeling

Expanded encyclopaedias of DNA elements in the human and mouse genomes

RNA editing in cancer impacts mRNA abundance in immune response pathways