Frontiers in Computational Biosciences Seminar Series: Chongzhi Zang, PhD, Associate Professor, University of Virginia
Boyer 159TITLE: "Computational Methods for Trancriptional Regulation" Hosted by Jingyi Jessica Li for Bioinformatics
Events for May 20 - April 29
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W1b: Intro to Unix command line II
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThis workshop (UNIX Command Line II) continues Workshop W1: UNIX Command Line I and uses the Hoffman2 campus computing cluster. The focus is on features that make dealing with large files or large numbers of files or repetitive tasks easier. These include shell variables, substitutions, redirections, pipes, loops, conditionals, subshells, shell functions, and shell scripts. […]
Frontiers in Computational Biosciences Seminar Series: Mia Levine, PhD, Associate Professor, University of Pennsylvania
Boyer 159TITLE: "Intra-genomic conflict and the evolution of genome integrity” Hosted by Kirk Lohmueller for Genetics & Genomics
W3: Intro to R and Data Visualization
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesR (www.r-project.org) is a free software environment for statistical computing and graphics. First, this workshop introduces basic concepts, syntax, and usage in R programming, statistical analysis, and visualization techniques. We will conduct hands-on tutorials throughout the session, giving attendees a chance to see R in action. This course is a pre-requisite for several other Collaboratory […]
W37: Applications of Large Language Models
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThis 3-day interactive workshop introduces the overarching principles guiding generative modeling and specifically Large-Scale Language Models (LLM), their application in Python for inference, and specific use-cases in Genomics. Experience with Python is necessary, and basic knowledge about ML workflows is preferred. At the end of this workshop, you WILL be comfortable with loading, inferencing and […]
Frontiers in Computational Biosciences Seminar Series: Omolola Ogunyemi, PhD, FACMI, Director, Center for Biomedical Informatics, Professor, Preventive & Social Medicine Charles Drew University
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesTITLE: “AI and the Healthcare Safety Net” Hosted by William Hsu for Medical Informatics
W31: Spatial Transcriptomics
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesSpatial transcriptomics is an emerging field that bridges molecular biology and anatomy. Over the last decade, a battery of assays have been developed that profile gene expression in-situ, i.e, measuring the abundances of mRNA molecules in cells and tissues while retaining information about their spatial locations. This workshop will introduce the basic concepts, major techniques, […]
Frontiers in Computational Biosciences Seminar Series: Angela Brooks, PhD, Professor, Department of Biomolecular Engineering, UC Santa Cruz
Boyer 159TITLE: TBD Hosted by Grace Xiao for Bioinformatics
W36: Mergeomics for Multiomics Integration
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesMergeomics is a computational tool designed to elucidate the underlying pathways, networks, and key regulators of complex diseases by integrating multi-omics data (genomics, transcriptomics, epigenomics, proteomics, etc). With use of integrative omics concepts and network modeling methods, this tool can uncover disease-associated gene sets and biological pathways across omics layers and can identify key drivers […]
W7: ChIP-seq Analysis
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThis workshop aims to provide skills needed to address principles of the assay, quality assessment, sequencing depth, data processing and functional downstream analyses of ChIP-seq datasets. Students will have opportunities to practice hands-on with state-of-the-art analytical tools.
