Frontiers in Computational Biosciences Seminar Series: Julia Salzman, PhD, Associate Professor, Department of Biomedical Data Science and of Biochemistry, Stanford University
Boyer Hall 159TITLE: TBD Hosted by Nandita Garud for Bioinformatics
Events for October 22 - October 7
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W28: Advanced Data Visualization w/ ggplot2
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesW7: ChIP-seq Analysis
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThis workshop aims to provide skills needed to address principles of the assay, quality assessment, sequencing depth, data processing and functional downstream analyses of ChIP-seq datasets. Students will have opportunities to practice hands-on with state-of-the-art analytical tools.
W21: Image Processing for Microscopy
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThe analysis of imaging datasets is both exciting and challenging. New and increasingly powerful techniques try to maximize the information derived from multi-dimensional imaging datasets. Yet, every dataset can be a unique analysis challenge, and packages may not always work out-of-the-box. In this workshop, we will explore some popular computational tools to extract quantitative information […]
W37: Applications of Large Language Models
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThis 3-day interactive workshop introduces the overarching principles guiding generative modeling and specifically Large-Scale Language Models (LLM), their application in Python for inference, and specific use-cases in Genomics. Experience with Python is necessary, and basic knowledge about ML workflows is preferred. At the end of this workshop, you WILL be comfortable with loading, inferencing and […]
Frontiers in Computational Biosciences Seminar Series: Brenna M. Henn, PdD, Associate Professor, Department of Anthropology; Co-Director, Northern Cape Tuberculosis Project, UC Davis
Boyer Hall 159TITLE: TBD Hosted by Noah Naitlen for Genetics & Genomics
W32: GitHub/Docker
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesLearn how to make your applications ready for production and distribution. This workshop will give you your introduction to setting up version control and containerization for your applications to ensure that changes are tracked and dependencies are documented and automatically installed. Git and Docker allow developers and users to quickly replicate code and computing environments […]
W5a: RNA-seq I Analysis
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesRNA-seq I aims to provide an introduction and the basics tools to process raw RNA-seq data on a cluster machine (Hoffman2). The workshop can serve also as a starting point to develop a gene expression project. This workshop is divided in three days that will cover major steps of processing RNA-seq. To facilitate learning, the […]
W20: Single-Cell RNA-Seq Analysis with R
529 Boyer Hall 611 Charles E Young Dr E,, Los Angeles, CA, United StatesThis workshop aims to introduce the basic concepts and algorithms for single-cell RNA-seq analysis. It will help participants obtain a better idea of how to use scRNA-seq technology, from considerations in experimental design to data analysis and interpretation. This workshop can serve researchers who are interested in designing an scRNA-seq study or who have acquired […]
Frontiers in Computational Biosciences Seminar Series: Andrea Ganna, PhD, Associate Professor at FIMM and HiLIFE; Research Associate, Harvard Medical School and Massachusetts General Hospital
Boyer Hall 159TITLE: TBD Hosted by Sriram Sankararaman for Bioinformatics
