TITLE: "Sources of zeros in single-cell RNA-seq data and how they affect data analysis." ABSTRACT: Single-cell RNA sequencing (scRNA-seq) technologies have revolutionized biomedical sciences by enabling genome-wide profiling of gene expression levels at an unprecedented single-cell resolution. A distinct characteristic of scRNA-seq data is the vast proportion of zeros unseen in bulk RNA-seq data. Researchers […]
Associate Dean for the Humanities, University of Michigan-Ann Arbor “TBD: History of genetic counseling” Hosted by Christina Palmer
Panelist: Leonid Kruglyak
TITLE: "A simple, two-step, multivalent binding model predicts IL-2 mutein cell signaling profiles." ABSTRACT: The common γ-chain cytokines are promising immune therapies, but have been limited in their efficacy due to their induction of non-specific immune activation. Here, we visualized immune cell response to both mono- and multivalent γ-chain muteins using a structured dimensionality reduction scheme. […]
TITLE: "Multimodal radiomic analysis of biparametric MRI to predict biochemical recurrence after radical prostatectomy." ABSTRACT: Integration of information across multiple modalities and biological scales has the potential to improve the prediction of disease outcomes and response to treatments. In this talk, I will discuss our ongoing work to predict prostate cancer aggressiveness by combining information from biparametric […]
Associate director, Gerstner Center for Cancer Diagnostics, Broad Institute “Ultrasensitive detection of minimal residual disease” Hosted by Jasmine Zhou
Panelist: Paul Boutros
TITLE: "Genome-wide survey of mutations influencing protein abundances in yeast" ABSTRACT: Our understanding of how protein-level regulation is encoded in the genome and how protein abundances are affected by DNA sequence variation remains sparse. I will discuss our genetic screen based on large-scale pooled base editing that allows us to capture the effects of thousands […]
TITLE: "Unbiased analysis of single cell RNA sequencing data reveals previously uncharacterized heterogeneity in small cell lung cancer cell lines." ABSTRACT: Small Cell Lung Cancer (SCLC) accounts for approximately 13% of all new lung cancer diagnoses. SCLC exhibits propensity for early metastasis, rapid cell division, high levels of replication stress, the ability to cope with […]
Associate Professor, Biostatistics & Bioinformatics, Center for Genomic and Computational Biology, Duke University “TBD” Hosted by Jason Ernst
